LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi10g2232	ATGGGGCAGGACCAAGAACTTGTAGAGCTCCTATGGCAGAAAGGACAGGTAGTTTTGCACAGCCAAACACTAAGGAAACCGGTTTTGAATTCTTTCGACTCAAGACAGGTTCAGAACAATGATCAATCAACAGTACGGACCAATGGGTTATATGGGAACTCGAGCAATTTGTTTCAGGAAGATGAGACAGTTTCATGGATCCAATACCCGCTTGAAGATCCATTTGAACAAGAACTATGTTCAGACTTTTTCCCTGAACTGCCATCCTGTGAAGTCGAGCCTGATAAGTCGATTAGGCAAATTGAAGAAGAAAAGTTTGTTAAATTTGGTGCCCACAGTGCCCCCCCTGTGATTGGAAGTTCACAACCACCTAATATGAGACCGTCCTGTGTTCAGAAATTCTCAGGAAGTCCTAGTTCTGCCCCAAAATTTCATTTTCCTGATTCATCTCAGAAAAACATTGACTCTAGTGGATCGCAAAAAGTCCTTAATTTTCCTCAGTTTTCGGCAACCCCCAAGTTTGCTACAGCATCTTCTAATGCACAATTTGGAGGGAAAGGTACAGGTAATCTGTCGCAAAGTGAGGCTAGAGAGTGCTCGGTGATGACAGTCGGTTCAAGCCACTGTGGCAGCAATCAAATTCCTCGAGACCTTGATGCGAGCAGGGTATCAAGCAATGGTGTTTGGACTACCAGTTTATCAGCTGAGCCTGACCAACCCTTCAGGGATGATGTTCAGAGAACATTTCCTAAGAGCGAAAAAGGGAAATCAGAAACACGTGAACCAACTGTCACTTCATCTTCTGGTGGCTCAGGCAGTAGTCTTGGAAAAACTTGTTGCCAATCTGCTAGAACCCATAGCCAGAAAAGAAAAGGGGCAGATGCAGAAGAATTAGAGGAACAAAGTGAGGCCATAGAACTCAAATCAGCTACTGAAAACAAGGCAGCTCAGCGGACAGGGCCTTCACGAAGGAACCGTGCTGCTGAAGTTCATAATCTCTCAGAAAGGAGACGAAGAGACAGGATCAATGAGAGGATGAGGGCGTTGCAACAACTCATACCTAACAGTAACAAGACAGATAAAGCATCGATGCTAGATGAGGCGATAGAATATTTGAAATCACTTCAGATGCAGCTTCAGGTAATGTGGATGGGAGCTGGCATGGCACCATTGATGTTTCCAGGATTTCAGAACTATATGTCCCAAATGGGTATGGGATTGGCTACACCTTCTTTGCCTCCTATTCATAGTCATATGAATATACCAAGAGTGCCACTTGATCAATCCATATCGGGGGCTCAGACACCAAACCAGACCGTAATGTTTCAAACTCCTGTTTTGGGTCCCTTTAATTACCAAAATCAGATGCCAAATCCAGCTCTTTCGGAGCAATATGCACGTTGTATGGGCTATCATCTTATACAAAGTGCCTCTCAGCCCATGAATGCATTTAGATATGGTTCCCACGCAGTACAACATAGTCAAACAATGATTCCACCTAGCAACAGTAATGGACCCCCGAGTGGAGCAGCTACGACTCATGATGCTGTAGGTGGAAAGATGGGTTAA	1569	0.4455	MGQDQELVELLWQKGQVVLHSQTLRKPVLNSFDSRQVQNNDQSTVRTNGLYGNSSNLFQEDETVSWIQYPLEDPFEQELCSDFFPELPSCEVEPDKSIRQIEEEKFVKFGAHSAPPVIGSSQPPNMRPSCVQKFSGSPSSAPKFHFPDSSQKNIDSSGSQKVLNFPQFSATPKFATASSNAQFGGKGTGNLSQSEARECSVMTVGSSHCGSNQIPRDLDASRVSSNGVWTTSLSAEPDQPFRDDVQRTFPKSEKGKSETREPTVTSSSGGSGSSLGKTCCQSARTHSQKRKGADAEELEEQSEAIELKSATENKAAQRTGPSRRNRAAEVHNLSERRRRDRINERMRALQQLIPNSNKTDKASMLDEAIEYLKSLQMQLQVMWMGAGMAPLMFPGFQNYMSQMGMGLATPSLPPIHSHMNIPRVPLDQSISGAQTPNQTVMFQTPVLGPFNYQNQMPNPALSEQYARCMGYHLIQSASQPMNAFRYGSHAVQHSQTMIPPSNSNGPPSGAATTHDAVGGKMG	522

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi10g2232	522	MobiDBLite	consensus disorder prediction	118	159	-	-
	Glsi10g2232	522	MobiDBLite	consensus disorder prediction	240	260	-	-
	Glsi10g2232	522	MobiDBLite	consensus disorder prediction	113	159	-	-
	Glsi10g2232	522	Coils	Coil	295	315	-	-
	Glsi10g2232	522	MobiDBLite	consensus disorder prediction	287	307	-	-
	Glsi10g2232	522	SMART	finulus	332	381	IPR011598	GO:0046983
	Glsi10g2232	522	Pfam	Helix-loop-helix DNA-binding domain	330	376	IPR011598	GO:0046983
	Glsi10g2232	522	CDD	bHLH_AtPIF_like	326	389	IPR047265	-
	Glsi10g2232	522	Gene3D	-	322	382	IPR036638	GO:0046983
	Glsi10g2232	522	MobiDBLite	consensus disorder prediction	492	522	-	-
	Glsi10g2232	522	PANTHER	TRANSCRIPTION FACTOR PIF3	3	483	IPR044273	GO:0003700\|GO:0006355
	Glsi10g2232	522	FunFam	Basic helix-loop-helix transcription factor	321	384	-	-
	Glsi10g2232	522	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	323	388	IPR036638	GO:0046983
	Glsi10g2232	522	MobiDBLite	consensus disorder prediction	230	339	-	-
	Glsi10g2232	522	MobiDBLite	consensus disorder prediction	261	286	-	-
	Glsi10g2232	522	MobiDBLite	consensus disorder prediction	492	510	-	-
	Glsi10g2232	522	MobiDBLite	consensus disorder prediction	324	339	-	-
	Glsi10g2232	522	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	326	375	IPR011598	GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi10g2232	Glsi-ChrGlsi10	18081962	18084533	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi10g2232	6	505	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT2G43010	34.549	4.78e-49	174

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Glsi10g2232		HLH	2e-14	No_clan