Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2223 ATGGAGAGTTCTCAGAGAAGAAAGTACCAAAAATCCAAACTTCCACGCCTGCGGTGGACACCGGAGCTGCATCAACATTTTGTTGAAGCAGTTGAACGTCTAGGTGGGAGACAAAAGGCAACTCCGAAGCGCATTTTGCAGATGATGCATGAGAAAGGACGACTTAATATCTCTCACATCAAAAGCCATCTTCAGGATTATAGAGAAGAAAATGATGGGAGAACAGAATTTGGTGAGGCCTCACTCTCTTTCAACACTCCTCTTATAAATAAGATGAAGGGTAGTGTTCAAGAGAGGAGACTCTTGTCTCCATCAACCTCAAGAGATTATTATGTGGACTCTTCTAGTTCCATACAATTAGACCTAAACATCTGA 375 0.4213 MESSQRRKYQKSKLPRLRWTPELHQHFVEAVERLGGRQKATPKRILQMMHEKGRLNISHIKSHLQDYREENDGRTEFGEASLSFNTPLINKMKGSVQERRLLSPSTSRDYYVDSSSSIQLDLNI 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2223 124 SUPERFAMILY Homeodomain-like 14 69 IPR009057 -
Glsi10g2223 124 NCBIfam myb-like DNA-binding domain, SHAQKYF class 15 69 IPR006447 GO:0003677
Glsi10g2223 124 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 5 93 IPR046955 GO:0003700
Glsi10g2223 124 Gene3D - 14 71 - -
Glsi10g2223 124 Pfam Myb-like DNA-binding domain 17 68 IPR001005 -
Glsi10g2223 124 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 72 IPR017930 -
Glsi10g2223 124 FunFam Two-component response regulator 10 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2223 Glsi-ChrGlsi10 17965516 17969820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2223 7 78 G2-like Transcription Factor Family AT2G42660 57.333 1.57e-22 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Glsi10g2223 Myb_DNA-binding 3.3e-08 CL0123