Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi10g2214 | ATGGCGACGGCAAGTCAGCAGATCCAAGATGACAAAGCCAAAAGTGTCACTTTTTCGAAGCGTCGATTTGAAATTTTCAAAAAAGCTAGTGAGCTTTGTACCCTATGTGCTGTAGAGATGGCCATTGTCATATTCTCTCCTGGTGGAAAAGCATACTCATTTGGTAATCCTTCTGTTGATACAATCATTAAAAAGTATACCCATTCTGCAAATTCAAATGCTTATGCTGCTGGAAAAGATGAGGCCCAACGAGAAGATGTGCTAGATGACCTTAACAAGCAGTACTCCGATTTGCTTTCTCAGTTAGATGCTGAAAAGAAGCGAGGTGGAATTTACTCTGCTGAAAATGCTGCAAGCTCTACCAAAGATCCATCAACTGGAGTGAATTCTTCTGCTAATGTTGTTTGA | 408 | 0.4069 | MATASQQIQDDKAKSVTFSKRRFEIFKKASELCTLCAVEMAIVIFSPGGKAYSFGNPSVDTIIKKYTHSANSNAYAAGKDEAQREDVLDDLNKQYSDLLSQLDAEKKRGGIYSAENAASSTKDPSTGVNSSANVV | 135 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi10g2214 | 135 | PRINTS | MADS domain signature | 35 | 56 | IPR002100 | GO:0003677|GO:0046983 | |
| Glsi10g2214 | 135 | PRINTS | MADS domain signature | 20 | 35 | IPR002100 | GO:0003677|GO:0046983 | |
| Glsi10g2214 | 135 | SMART | madsneu2 | 6 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
| Glsi10g2214 | 135 | MobiDBLite | consensus disorder prediction | 114 | 135 | - | - | |
| Glsi10g2214 | 135 | Gene3D | - | 11 | 82 | IPR036879 | GO:0003677|GO:0046983 | |
| Glsi10g2214 | 135 | ProSiteProfiles | MADS-box domain profile. | 6 | 58 | IPR002100 | GO:0003677|GO:0046983 | |
| Glsi10g2214 | 135 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 8 | 54 | IPR002100 | GO:0003677|GO:0046983 | |
| Glsi10g2214 | 135 | Coils | Coil | 88 | 108 | - | - | |
| Glsi10g2214 | 135 | PANTHER | MADS BOX PROTEIN | 7 | 105 | - | - | |
| Glsi10g2214 | 135 | SUPERFAMILY | SRF-like | 6 | 74 | IPR036879 | GO:0003677|GO:0046983 | |
| Glsi10g2214 | 135 | FunFam | Agamous-like MADS-box protein AGL62 | 10 | 76 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi10g2214 | Glsi-ChrGlsi10 | 17879678 | 17880239 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi10g2214 | 7 | 108 | Type I MADS-box Gene Family | AT5G60440 | 44.444 | 2.48e-27 | 100 |
Transcription factors information