Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2202 ATGGAAGTGGCTAAGGTAAATGGTGAGGAAGAGGAAGAGGTTATGCCTCCTCCTGGGTTTAGATTTCACCCCACAGATGAAGAACTTGTAGGGTTTTATCTGCAGAGAAAGGTAGAGAAGAAGCCTCTTCCAATCGAGCTCATCAAACAGATTGATATTTACAAATACGATCCTTGGGATCTTCCAAAAGTGAGCTGTGTGGGGGAAACGGAAGGGTACTTCTTCTGCAGAAGAGGGAGGAAGTACAGGAACAGCATGAGACCAAACAGGGTGAGTGGGAGTGGGTCTGGATTCTGGAAGGCCACTGGGATAGACAAGGCCATATATGGAGGAGGAGGAGTTAGATCAGAACAAGCCCGATTGTCCATTATTGGCCTCAAGAAGTCCTTAGTGTACTACCGTGGAAGTGCTGGTAAAGGCACCAAAACTGACTGGATGATGCATGAGTTTCGCCTTCCACCCACCAACAACAATACCACCATTCCCAATATTCAAGAAGCTGAAGTGTGGACACTCTGCCGAATATTCAAAAGAATCCCAGCTTACAAAAAATATACACCAACTTTTAAAGAGACAGCAGCAGCCGCCAAACCCAACCCAACTCATTCAACTTCTAAAACATGCAGCTCAGAAACGGACAATGGCAAGCCATACTTGACTTTCAAAGACTCACTGATCATTCAACAAAATGATGAAATAAAGAATCAGATTATGAATATTGAGCAGGTTGAATGTGAAAGAAACCACTTGTTTCTGGGTCAGTTTGGCCCTGGGGCTCAAGCAACTCCACCAACACTGTCTTACCCACGATTTTGGAACCCTAACGCGGTGGAAGATGTGTTTGCAGATGGAAACTGGGATGAACTTGGACCTGTGGTTCAGTTTGCTATTGATCAATCCAAGTATAAATGGTACCCTTCATCAGAGGCAGGGCATTACACAACTAGGATTAGGGCACTGAAAAAAGATATCAAGAAGGCATACATTCTCATCCAACCAAATGGTATAACTACATTACCTGGCTACAGGTGA 1032 0.4438 MEVAKVNGEEEEEVMPPPGFRFHPTDEELVGFYLQRKVEKKPLPIELIKQIDIYKYDPWDLPKVSCVGETEGYFFCRRGRKYRNSMRPNRVSGSGSGFWKATGIDKAIYGGGGVRSEQARLSIIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPTNNNTTIPNIQEAEVWTLCRIFKRIPAYKKYTPTFKETAAAAKPNPTHSTSKTCSSETDNGKPYLTFKDSLIIQQNDEIKNQIMNIEQVECERNHLFLGQFGPGAQATPPTLSYPRFWNPNAVEDVFADGNWDELGPVVQFAIDQSKYKWYPSSEAGHYTTRIRALKKDIKKAYILIQPNGITTLPGYR 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2202 343 MobiDBLite consensus disorder prediction 1 20 - -
Glsi10g2202 343 MobiDBLite consensus disorder prediction 1 17 - -
Glsi10g2202 343 Coils Coil 226 246 - -
Glsi10g2202 343 Gene3D NAC domain 25 181 IPR036093 GO:0003677|GO:0006355
Glsi10g2202 343 SUPERFAMILY NAC domain 14 177 IPR036093 GO:0003677|GO:0006355
Glsi10g2202 343 ProSiteProfiles NAC domain profile. 16 178 IPR003441 GO:0003677|GO:0006355
Glsi10g2202 343 MobiDBLite consensus disorder prediction 193 212 - -
Glsi10g2202 343 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 222 - -
Glsi10g2202 343 Pfam No apical meristem (NAM) protein 17 152 IPR003441 GO:0003677|GO:0006355
Glsi10g2202 343 MobiDBLite consensus disorder prediction 197 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2202 Glsi-ChrGlsi10 17658241 17662959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2202 1 181 NAC Transcription Factor Family AT5G39820 53.266 6.76e-67 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi10g2202 NAM 1e-34 No_clan