Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2178 ATGGAGAATGACAAAGGCCTTCACCATTTTGATCCTTTCCATTACAACCACCATGAACTCACCCAAAACCTTGAAGGGTTTGATCCCTCAAACGTAAGCTTCATTGATTTCTTACATGGTTCTTCCATGGATATTCATCACTACAAGGCTCTCTCAAGAGCCTTTGACCTATCTTGTTCACCGTCTGAGGTGGTCTCCTCCATTGATGACAACCCAAAGAAGAACCCATCTTCGCCCAAGTCATCGCTTTCTTCATCGTCTAATGGGGCTGCTCCAGATGTAGTAACAGAAGAAGACTCGGCTAAGAGCAAGAAAGATGAACAACCAAAAGGGTGTGATGAAGATGGAGGTGATGATCAAAAGTCTAAGAAAATGAGCAAGTCAAAGAAGAAAGAGAAAAAGGCAAGAGAGCCACGTTGTGCCTTCTTGACTAAAAGTGAGATCGATATCCTTGAAGATGGGTACAAATGGAGAAAATATGGACAGAAAGCAGTCAAGAATAGTCCTTTCCCAAGGAATTATTACAAATGCACGAGTCAGAAGTGCATAGTGAAGAAGAGGGTGGAGAGGTCATTCCAAAACCCATCAATTGTGATCACAACATACGAAGGGCAGCACAACCATCACTGCCCAGCAACACTTAGAGGCAATCTTGCTGCTTCTGCCATGTTCTCCTCTTCCTCTTTTTTAGGCTCAAGAAGCTTACCCCAAGATCGCAGCCTGCCTCAGTTTCTTCCAAGCCCTCAGTACCAGCAGCAGCACCAGCTCCAGCTCCAACTCTCGCGGGACAATGGCTTGTTGCAAGACCTACTACTGCCCTCATTTCCTGGCAAACAATAG 840 0.4524 MENDKGLHHFDPFHYNHHELTQNLEGFDPSNVSFIDFLHGSSMDIHHYKALSRAFDLSCSPSEVVSSIDDNPKKNPSSPKSSLSSSSNGAAPDVVTEEDSAKSKKDEQPKGCDEDGGDDQKSKKMSKSKKKEKKAREPRCAFLTKSEIDILEDGYKWRKYGQKAVKNSPFPRNYYKCTSQKCIVKKRVERSFQNPSIVITTYEGQHNHHCPATLRGNLAASAMFSSSSFLGSRSLPQDRSLPQFLPSPQYQQQHQLQLQLSRDNGLLQDLLLPSFPGKQ 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2178 279 Pfam WRKY DNA -binding domain 152 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi10g2178 279 FunFam WRKY transcription factor 57 137 211 - -
Glsi10g2178 279 ProSiteProfiles WRKY domain profile. 146 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi10g2178 279 SUPERFAMILY WRKY DNA-binding domain 144 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi10g2178 279 MobiDBLite consensus disorder prediction 62 138 - -
Glsi10g2178 279 SMART WRKY_cls 151 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi10g2178 279 Gene3D WRKY domain 136 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi10g2178 279 MobiDBLite consensus disorder prediction 62 93 - -
Glsi10g2178 279 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 62 246 IPR044810 GO:0003700
Glsi10g2178 279 MobiDBLite consensus disorder prediction 97 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2178 Glsi-ChrGlsi10 17131622 17134895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2178 26 216 WRKY Transcription Factor Family AT4G18170 50.481 7.69e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Glsi10g2178 WRKY 1.8e-24 CL0274