Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Glsi10g2173 | ATGGAGGCAGTGGACGAGCATACTTTGGATTCTAAGTCACCCTGTGGCGCTGCTGGTCCATCTGGGATTTCTTCACTTAATGTTGCTAAAAAAGTGGGAAGCAGTGCATGGGGGACACCATATGGGGCTGATGCATATCATGCATCTAGTGATGCTAGCTTGTTTTCTAGTTCTCTGCCTCTACTTCCACATGAAAAGTTGAATTTTCCTGATTCAGAGCATTATCACCTACCTGTTAACGATAACTTGCCAATATTTAATAAAGTTCACAAAGAAGTTGAGGGATACGATCCACTTGAAGATGTTGAAACCAATGCAATTGGAAACATGCTTCCTGATGATGAAGAAGAGCTATTAGCTGGGATAACAGATGATTTTGACCTTAGTAGGTTGCCCAGCCAACTGGAGGATCTGGATGAAAATGATCTGTTTGGCAGTGGAGGGGGGCTTGAAATGGATTTTGAACCCCAAGAGAGTCTTAGTATTGGTTTGTCAAAGATAAGCATTGCTGATGGAGTGGCTTCAAATGGTATGGCCCATTATGCACTTCCAAATGGCATGGGAACAGTTGCTGGGGAGCATCCCTATGGAGAGCATCCATCAAGGACATTATTTGTTCGAAACATCAATAGTAATGTTGAGGACTCTGAATTAAGATCACTATTTGAGCAATATGGGGATATCAGAACATTGTACACTGCATGCAAGCATAGGGGTTTTGTGATGATATCGTATTATGATATTCGAGCTGCTCGCACTGCAATGCGTGCTTTACAGAACAAGCCCTTGAGACGAAGGAAACTAGACATTCATTTTTCAATTCCTAAGGACAACCCCTCAGAGAAGGATATAAACCAGGGAACTCTTGTAGTGTTCAATTTGGATCCGTCAGTATCAAATGACGATCTTCGTCTAATATTTGGGGCTTATGGGGAGGTCAAAGAGATAAGGGAAACACCACATAAAAGACACCATAAATTTATTGAATTTTATGATGTTAGAGCAGCTGAGGCTGCTCTTAAAGCATTAAATCGGAGCGATATTGCTGGGAAACGCATCAAACTTGAGCCCAGCCGTCCTGGTGGGGCTCGTCGAAATTTGATGCAACAACTGAGTCAAGAGCTGGAACAAGATGAGGCATGGACTTTTAGACATCAAGTGGGTTCACCAATGGCCAATTCTCCTCCTGGTAGCTGGGCACAGTTTGGCAGTCCGGTTGAACATAATTATCTAGGTTCTTTTAGCAATTCTCCAGCCATAGGTTGTGCCAGCCCAGTGAATAGCAACCATTTGCCTGGATTGGCCGCAATTCTTTCCCCTCATGCATCAAACTCTACAAAGATTGCACCAATTGGCAAGGACTCAGGAAGGGTTAATAATTCAAATCAGATATTTACAAACTCCGGATTAACACAAGGAGCAGCTTTTCAGCATTCTGTGTCCTTTCCTGAGCTAAAAGTAAATGTAAGTTCTGGATCCATTTCAACTTTTGGTGAATCAAACTCAAGTTCGTCAAGCATTGGAACACTGTCTGGTCCTCAATTTCTCTGGGGAAGTCCAACTACTACTTACACAGATCATTCGAACACTTCTGCCTGGTCTTCATCTTCTTCTGGGCTTCCCTTTACATCTAGTGGCGAGAAGCAGGGTTTCCCATATACTAGTCGGCACAGTTCTTTCCTTGGTTCCCGCTCCCATCATCATGTGGGATCTGCTCCATCTGGCCTTCCTCTTGATAGGCATTTTAGCCACTTCCCAGAGTCACCAGAAGCTTCTTTCATGAGTCCAGTTGCATTTGGGAGTTTAAATCATGGTGAAGGGAATTTTATGACCATGGGCGCTCGTTCATCTGTAGGGGTTGTTGGCCTTTCAGGAAATACAACTGAAATTAATTCACCTAGTTTCAGAATGATGTCGCTGTCTAGGCAAGGTTCCTTGTTTCTTGGAAATGGTTCTTATTCAGGACCAGGTGCATATAACAATGAGGTGTTTACTGAGCGAGGTCGGAGTCGGCGACCTGAAAATAATGGAACTCAAATTGATAACAAGAAGCAGTATCAACTTGATCTGGACAAAATTATCAGCGGGGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAAGTACACTTCAAAGATGCTTCTGTCTGCAATTGATGAGAACCACCGGGGTACTTATGACTTTCTCTACTTGCCAATTGACTTTAAGAACAAGTGTAATGTGGGTTATGCTTTCATCAATATGGCGTCTCCTTCACACATCATTCCATTCTATAAGGAATTCAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCATCACTGGCATATGCACGAATACAGGGAAAGGCTGCGCTTGTGACACACTTTCAGAATTCAAGCCTAATGAATGAGGATAAGCGGTGCAGGCCTATTCTCTTTCATTCAGAGGGTCAAGAGACTGTTGAACAGGAACCTTTCTTATCCAGCAATCTGAATATATGCATCCGGCAACCAGATGGGTCATACTCAGGAGATTTGTTGGAGAGCCCAAAGGGAGATTTGGATGAGAAGCTATAG | 2574 | 0.4285 | MEAVDEHTLDSKSPCGAAGPSGISSLNVAKKVGSSAWGTPYGADAYHASSDASLFSSSLPLLPHEKLNFPDSEHYHLPVNDNLPIFNKVHKEVEGYDPLEDVETNAIGNMLPDDEEELLAGITDDFDLSRLPSQLEDLDENDLFGSGGGLEMDFEPQESLSIGLSKISIADGVASNGMAHYALPNGMGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRLIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEAWTFRHQVGSPMANSPPGSWAQFGSPVEHNYLGSFSNSPAIGCASPVNSNHLPGLAAILSPHASNSTKIAPIGKDSGRVNNSNQIFTNSGLTQGAAFQHSVSFPELKVNVSSGSISTFGESNSSSSSIGTLSGPQFLWGSPTTTYTDHSNTSAWSSSSSGLPFTSSGEKQGFPYTSRHSSFLGSRSHHHVGSAPSGLPLDRHFSHFPESPEASFMSPVAFGSLNHGEGNFMTMGARSSVGVVGLSGNTTEINSPSFRMMSLSRQGSLFLGNGSYSGPGAYNNEVFTERGRSRRPENNGTQIDNKKQYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLSAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMASPSHIIPFYKEFNGKKWEKFNSEKVASLAYARIQGKAALVTHFQNSSLMNEDKRCRPILFHSEGQETVEQEPFLSSNLNICIRQPDGSYSGDLLESPKGDLDEKL | 857 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Glsi10g2173 | 857 | Gene3D | - | 190 | 285 | IPR012677 | - | |
Glsi10g2173 | 857 | SUPERFAMILY | RNA-binding domain, RBD | 199 | 362 | IPR035979 | GO:0003676 | |
Glsi10g2173 | 857 | SUPERFAMILY | RNA-binding domain, RBD | 702 | 787 | IPR035979 | GO:0003676 | |
Glsi10g2173 | 857 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 287 | 360 | IPR000504 | GO:0003723 | |
Glsi10g2173 | 857 | Gene3D | - | 286 | 382 | IPR012677 | - | |
Glsi10g2173 | 857 | Pfam | RNA recognition motif 2 | 700 | 796 | IPR007201 | - | |
Glsi10g2173 | 857 | SMART | rrm1_1 | 288 | 356 | IPR000504 | GO:0003723 | |
Glsi10g2173 | 857 | SMART | rrm1_1 | 702 | 778 | IPR000504 | GO:0003723 | |
Glsi10g2173 | 857 | SMART | rrm1_1 | 203 | 271 | IPR000504 | GO:0003723 | |
Glsi10g2173 | 857 | PANTHER | RNA RECOGNITION MOTIF-CONTAINING | 45 | 818 | - | - | |
Glsi10g2173 | 857 | CDD | RRM2_MEI2_like | 286 | 356 | - | - | |
Glsi10g2173 | 857 | FunFam | Protein MEI2-like 1 | 286 | 381 | - | - | |
Glsi10g2173 | 857 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 289 | 354 | IPR000504 | GO:0003723 | |
Glsi10g2173 | 857 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 204 | 268 | IPR000504 | GO:0003723 | |
Glsi10g2173 | 857 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 202 | 275 | IPR000504 | GO:0003723 | |
Glsi10g2173 | 857 | FunFam | MEI2-like protein 5 isoform 2 | 191 | 285 | - | - | |
Glsi10g2173 | 857 | CDD | RRM1_MEI2_like | 201 | 277 | IPR034453 | - | |
Glsi10g2173 | 857 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Glsi10g2173 | 857 | CDD | RRM3_MEI2_like | 703 | 788 | IPR034454 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Glsi10g2173 | Glsi-ChrGlsi10 | 17091653 | 17099940 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Glsi10g2173 | 197 | 395 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 25.333 | 5.23e-06 | 48.1 |