Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2173 ATGGAGGCAGTGGACGAGCATACTTTGGATTCTAAGTCACCCTGTGGCGCTGCTGGTCCATCTGGGATTTCTTCACTTAATGTTGCTAAAAAAGTGGGAAGCAGTGCATGGGGGACACCATATGGGGCTGATGCATATCATGCATCTAGTGATGCTAGCTTGTTTTCTAGTTCTCTGCCTCTACTTCCACATGAAAAGTTGAATTTTCCTGATTCAGAGCATTATCACCTACCTGTTAACGATAACTTGCCAATATTTAATAAAGTTCACAAAGAAGTTGAGGGATACGATCCACTTGAAGATGTTGAAACCAATGCAATTGGAAACATGCTTCCTGATGATGAAGAAGAGCTATTAGCTGGGATAACAGATGATTTTGACCTTAGTAGGTTGCCCAGCCAACTGGAGGATCTGGATGAAAATGATCTGTTTGGCAGTGGAGGGGGGCTTGAAATGGATTTTGAACCCCAAGAGAGTCTTAGTATTGGTTTGTCAAAGATAAGCATTGCTGATGGAGTGGCTTCAAATGGTATGGCCCATTATGCACTTCCAAATGGCATGGGAACAGTTGCTGGGGAGCATCCCTATGGAGAGCATCCATCAAGGACATTATTTGTTCGAAACATCAATAGTAATGTTGAGGACTCTGAATTAAGATCACTATTTGAGCAATATGGGGATATCAGAACATTGTACACTGCATGCAAGCATAGGGGTTTTGTGATGATATCGTATTATGATATTCGAGCTGCTCGCACTGCAATGCGTGCTTTACAGAACAAGCCCTTGAGACGAAGGAAACTAGACATTCATTTTTCAATTCCTAAGGACAACCCCTCAGAGAAGGATATAAACCAGGGAACTCTTGTAGTGTTCAATTTGGATCCGTCAGTATCAAATGACGATCTTCGTCTAATATTTGGGGCTTATGGGGAGGTCAAAGAGATAAGGGAAACACCACATAAAAGACACCATAAATTTATTGAATTTTATGATGTTAGAGCAGCTGAGGCTGCTCTTAAAGCATTAAATCGGAGCGATATTGCTGGGAAACGCATCAAACTTGAGCCCAGCCGTCCTGGTGGGGCTCGTCGAAATTTGATGCAACAACTGAGTCAAGAGCTGGAACAAGATGAGGCATGGACTTTTAGACATCAAGTGGGTTCACCAATGGCCAATTCTCCTCCTGGTAGCTGGGCACAGTTTGGCAGTCCGGTTGAACATAATTATCTAGGTTCTTTTAGCAATTCTCCAGCCATAGGTTGTGCCAGCCCAGTGAATAGCAACCATTTGCCTGGATTGGCCGCAATTCTTTCCCCTCATGCATCAAACTCTACAAAGATTGCACCAATTGGCAAGGACTCAGGAAGGGTTAATAATTCAAATCAGATATTTACAAACTCCGGATTAACACAAGGAGCAGCTTTTCAGCATTCTGTGTCCTTTCCTGAGCTAAAAGTAAATGTAAGTTCTGGATCCATTTCAACTTTTGGTGAATCAAACTCAAGTTCGTCAAGCATTGGAACACTGTCTGGTCCTCAATTTCTCTGGGGAAGTCCAACTACTACTTACACAGATCATTCGAACACTTCTGCCTGGTCTTCATCTTCTTCTGGGCTTCCCTTTACATCTAGTGGCGAGAAGCAGGGTTTCCCATATACTAGTCGGCACAGTTCTTTCCTTGGTTCCCGCTCCCATCATCATGTGGGATCTGCTCCATCTGGCCTTCCTCTTGATAGGCATTTTAGCCACTTCCCAGAGTCACCAGAAGCTTCTTTCATGAGTCCAGTTGCATTTGGGAGTTTAAATCATGGTGAAGGGAATTTTATGACCATGGGCGCTCGTTCATCTGTAGGGGTTGTTGGCCTTTCAGGAAATACAACTGAAATTAATTCACCTAGTTTCAGAATGATGTCGCTGTCTAGGCAAGGTTCCTTGTTTCTTGGAAATGGTTCTTATTCAGGACCAGGTGCATATAACAATGAGGTGTTTACTGAGCGAGGTCGGAGTCGGCGACCTGAAAATAATGGAACTCAAATTGATAACAAGAAGCAGTATCAACTTGATCTGGACAAAATTATCAGCGGGGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAAGTACACTTCAAAGATGCTTCTGTCTGCAATTGATGAGAACCACCGGGGTACTTATGACTTTCTCTACTTGCCAATTGACTTTAAGAACAAGTGTAATGTGGGTTATGCTTTCATCAATATGGCGTCTCCTTCACACATCATTCCATTCTATAAGGAATTCAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCATCACTGGCATATGCACGAATACAGGGAAAGGCTGCGCTTGTGACACACTTTCAGAATTCAAGCCTAATGAATGAGGATAAGCGGTGCAGGCCTATTCTCTTTCATTCAGAGGGTCAAGAGACTGTTGAACAGGAACCTTTCTTATCCAGCAATCTGAATATATGCATCCGGCAACCAGATGGGTCATACTCAGGAGATTTGTTGGAGAGCCCAAAGGGAGATTTGGATGAGAAGCTATAG 2574 0.4285 MEAVDEHTLDSKSPCGAAGPSGISSLNVAKKVGSSAWGTPYGADAYHASSDASLFSSSLPLLPHEKLNFPDSEHYHLPVNDNLPIFNKVHKEVEGYDPLEDVETNAIGNMLPDDEEELLAGITDDFDLSRLPSQLEDLDENDLFGSGGGLEMDFEPQESLSIGLSKISIADGVASNGMAHYALPNGMGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRLIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEAWTFRHQVGSPMANSPPGSWAQFGSPVEHNYLGSFSNSPAIGCASPVNSNHLPGLAAILSPHASNSTKIAPIGKDSGRVNNSNQIFTNSGLTQGAAFQHSVSFPELKVNVSSGSISTFGESNSSSSSIGTLSGPQFLWGSPTTTYTDHSNTSAWSSSSSGLPFTSSGEKQGFPYTSRHSSFLGSRSHHHVGSAPSGLPLDRHFSHFPESPEASFMSPVAFGSLNHGEGNFMTMGARSSVGVVGLSGNTTEINSPSFRMMSLSRQGSLFLGNGSYSGPGAYNNEVFTERGRSRRPENNGTQIDNKKQYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLSAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMASPSHIIPFYKEFNGKKWEKFNSEKVASLAYARIQGKAALVTHFQNSSLMNEDKRCRPILFHSEGQETVEQEPFLSSNLNICIRQPDGSYSGDLLESPKGDLDEKL 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2173 857 Gene3D - 190 285 IPR012677 -
Glsi10g2173 857 SUPERFAMILY RNA-binding domain, RBD 199 362 IPR035979 GO:0003676
Glsi10g2173 857 SUPERFAMILY RNA-binding domain, RBD 702 787 IPR035979 GO:0003676
Glsi10g2173 857 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 287 360 IPR000504 GO:0003723
Glsi10g2173 857 Gene3D - 286 382 IPR012677 -
Glsi10g2173 857 Pfam RNA recognition motif 2 700 796 IPR007201 -
Glsi10g2173 857 SMART rrm1_1 288 356 IPR000504 GO:0003723
Glsi10g2173 857 SMART rrm1_1 702 778 IPR000504 GO:0003723
Glsi10g2173 857 SMART rrm1_1 203 271 IPR000504 GO:0003723
Glsi10g2173 857 PANTHER RNA RECOGNITION MOTIF-CONTAINING 45 818 - -
Glsi10g2173 857 CDD RRM2_MEI2_like 286 356 - -
Glsi10g2173 857 FunFam Protein MEI2-like 1 286 381 - -
Glsi10g2173 857 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 289 354 IPR000504 GO:0003723
Glsi10g2173 857 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 268 IPR000504 GO:0003723
Glsi10g2173 857 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 275 IPR000504 GO:0003723
Glsi10g2173 857 FunFam MEI2-like protein 5 isoform 2 191 285 - -
Glsi10g2173 857 CDD RRM1_MEI2_like 201 277 IPR034453 -
Glsi10g2173 857 MobiDBLite consensus disorder prediction 1 23 - -
Glsi10g2173 857 CDD RRM3_MEI2_like 703 788 IPR034454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2173 Glsi-ChrGlsi10 17091653 17099940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2173 197 395 Eukaryotic Initiation Factors Gene Family AT1G71770 25.333 5.23e-06 48.1