Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2146 ATGGAGCTTCCAATTCAAGCACAGGAGGGATCTTCCCAGAAGAAGAAAATGGGAAGAGGAAAAATTGAGATAAAGAGGATAGAGAACACAACGAATAGGCAAGTCACCTTCTGTAAGCGTCGCAACGGTTTGCTGAAGAAAGCCTATGAATTGTCGGTATTGTGCGATGCTGAAGTTTCTCTCGTTGTCTTCTCAAGCCGTGGTCGCCTATATGAGTATGCCAACAACAGTGTTAGAGGCACTATCGAAAGGTACAAGAAAGCTTGTGCTCCTTCCTCAAACACATCTGTATCTGAAGCTAATATACAGTTTTTCGAGCAAGAAGTCTCCAAATTAAGAAGACAGATACGAGAGATTCAGAATCTAAACAGGCACATACTTGGTAAATCTCTAAGCTCTTTGAATCTTAAAGAGCTGAAGAACCTTGAGGGAAGATTGGAGAAGGGCTTAAGCAGAATTAGATCCAAAAAGCATGAAACCTTGTTTGCTGAAGTTGAGTTCATGCGAAAGAGGATTGCTGAACAAGAAAGAGCACAACATGATGAGCAACAAAATTTTATGCAGGGAACTGTGTGTGAGGAGTTCATAACTAATTTCTTCCCTGGAAATCTTCTAAATCCCAATCATCATTATTCACGCCAAGACCAAACTGCTCTTCAACTTGTGAGAGCAGCTGGAAATTCTTCCACAAGCCTCTATAATTCTTCCATTGTTGATCTATCCGAATGCTTTGCAAGTGATAGTGTCCATAATGGAGAGCCTTTATAA 768 0.4076 MELPIQAQEGSSQKKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLVVFSSRGRLYEYANNSVRGTIERYKKACAPSSNTSVSEANIQFFEQEVSKLRRQIREIQNLNRHILGKSLSSLNLKELKNLEGRLEKGLSRIRSKKHETLFAEVEFMRKRIAEQERAQHDEQQNFMQGTVCEEFITNFFPGNLLNPNHHYSRQDQTALQLVRAAGNSSTSLYNSSIVDLSECFASDSVHNGEPL 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2146 255 Pfam K-box region 101 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi10g2146 255 CDD MADS_MEF2_like 18 94 IPR033896 GO:0000977|GO:0045944
Glsi10g2146 255 ProSiteProfiles K-box domain profile. 102 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi10g2146 255 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Glsi10g2146 255 Coils Coil 158 185 - -
Glsi10g2146 255 PANTHER SERUM RESPONSE FACTOR HOMOLOG 17 182 - -
Glsi10g2146 255 MobiDBLite consensus disorder prediction 1 21 - -
Glsi10g2146 255 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Glsi10g2146 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Glsi10g2146 255 Gene3D - 29 111 IPR036879 GO:0003677|GO:0046983
Glsi10g2146 255 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Glsi10g2146 255 Coils Coil 102 122 - -
Glsi10g2146 255 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Glsi10g2146 255 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Glsi10g2146 255 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Glsi10g2146 255 SUPERFAMILY SRF-like 18 102 IPR036879 GO:0003677|GO:0046983
Glsi10g2146 255 FunFam MADS-box transcription factor 21 29 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2146 Glsi-ChrGlsi10 16573409 16582826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2146 15 222 MADS-box Gene Family AT3G58780 65.106 6.78e-101 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi10g2146 K-box 1.4e-19 No_clan