Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2140 ATGGAAACAAAAGATTCTGATGTTTCAAAAGCTGAAGAATTCAAACTCCTTGCCAATGAAGCATTCAATGCTCGCAAATATGCCCAAGCTATTGATCTATATACACAAGCCATTGAATTAAACAGTCGAAATGCTGTATACTGGGCTAATCGTGCCTTTGCCCATCTTAGGCTTGAGGAGTATGGTAGTGCAATACAAGATGCTACAAAGGCTATTGAAGTTGATCCTAAATATTCAAAGGGTTATTACAGGCGGGGTGCTGCTCATCTTGCCATGGGGAAATTCAAGGAAGCACTGAAGGATTTTCAGCAGGTCAAGAAAATGTGCCCAAATGATCTTGATGCAACAAAGAAATTGAAGGAATGTGAAAAAGCAGTCATGAAGCTTAAATTTGAAGAAGCAATTGCTGCACCAGAGTCTGAAAGGCGTTCAATAACTGAATCCATAGATTTCCGTTCTATAGGAAATGGCCACAAATCTTTGGTGCCCACCGAAGTGGCCATAGCAGCAGTGACAGTAGCAGTCTTGGCAGCTGTGGTGATGTTGTTGAGGACATCATGGACCACAATGGTAGCTGCAGTTGTGGTCAGTTTGCTGTTGCTCCTTGGGGCATATTGGTGGAGTGGCTGCAATGCTGGCTGGAGTCATTTACATAACCTAGATGTGGAGCCACAATATTCAGGAGCAAGAATAGAAGGGGATGTTGTTACTTTGGATTTTGTGAAAAAAATGATGGATGATTTCAAGAATCAGAAGTGCATACATAAAAGGTATGCATTCCAGATTGTATTGCAAATCAGAGAGATGTTGCAAGCCTTGCCTTCTCTTGTTGATATAAATGTTCCTGATGGCAAACATTTCACTGTTTGTGGTGATGTGCATGGTCAGTACTATGATCTCTTAAATATTTTTGAGCTTAATGGGCTTCCCTCAGAAGAGAATCCTTACCTTTTTAATGGAGACTTTGTGGATAGAGGATCTTTCTCTCTGGAAGTCATCCTCACTCTGTTTGCACTCAAGTGCATGTCTCCATCAGCCATATATCTAGCTAGAGGAAATCATGAGAGCAAGAACATGAACAAGATATATGGTTTTGAGGGTGAGGTCCGCTCAAAGTTGAATGACACATTTGTGGAACTATTTGCGGAAGTATTCTGCTGTTTACCTTTGGCTCATGTGATAAATGAGAAGGTTTTTGTGGTTCATGGAGGTCTTTTTAGTAATGATGGGGTCAAGCTCTCTGACATTAGAGCAATTAACCGGTTTTGTGAGCCTCCAGAAGAAGGATTAATGTGTGAATTGTTATGGAGTGATCCACAACCTCTCCCTGGAAGGGGCCCAAGCAAGCGTGGTGTAGGTCTTTCTTTTGGTTCAGATGTGACAAAAAAGTTTTTGCAGGAAAACAATCTAGATTTAGTTGTGCGATCTCATGAAGTAAAGGATGAGGGTTATGAGATTGAACATGATGGTAAACTCATAACTGTATTTTCTGCTCCAAACTACTGTGACCAGATGGGTAACAAAGGTGCCTTTATTCGATTTGAAGCACCTGATTTGAAGCCTAACATTGTGACTTTCTCTGCAGTGCCACACCCTGATGTGAAGCCAATGGCTTATGCAAACAACTTCCTCCGGATGTTCTCATAA 1647 0.4135 METKDSDVSKAEEFKLLANEAFNARKYAQAIDLYTQAIELNSRNAVYWANRAFAHLRLEEYGSAIQDATKAIEVDPKYSKGYYRRGAAHLAMGKFKEALKDFQQVKKMCPNDLDATKKLKECEKAVMKLKFEEAIAAPESERRSITESIDFRSIGNGHKSLVPTEVAIAAVTVAVLAAVVMLLRTSWTTMVAAVVVSLLLLLGAYWWSGCNAGWSHLHNLDVEPQYSGARIEGDVVTLDFVKKMMDDFKNQKCIHKRYAFQIVLQIREMLQALPSLVDINVPDGKHFTVCGDVHGQYYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFALKCMSPSAIYLARGNHESKNMNKIYGFEGEVRSKLNDTFVELFAEVFCCLPLAHVINEKVFVVHGGLFSNDGVKLSDIRAINRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGSDVTKKFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIVTFSAVPHPDVKPMAYANNFLRMFS 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2140 548 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Glsi10g2140 548 FunFam Serine/threonine-protein phosphatase 5 210 547 - -
Glsi10g2140 548 SUPERFAMILY Metallo-dependent phosphatases 235 542 IPR029052 -
Glsi10g2140 548 SUPERFAMILY TPR-like 7 137 IPR011990 GO:0005515
Glsi10g2140 548 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Glsi10g2140 548 FunFam Serine/threonine-protein phosphatase 5 1 138 - -
Glsi10g2140 548 Pfam PPP5 TPR repeat region 217 278 IPR013235 -
Glsi10g2140 548 Pfam Calcineurin-like phosphoesterase 286 480 IPR004843 GO:0016787
Glsi10g2140 548 CDD MPP_PP5_C 226 541 IPR041753 -
Glsi10g2140 548 SMART pp2a_7 254 530 IPR006186 GO:0016787
Glsi10g2140 548 Gene3D - 212 547 IPR029052 -
Glsi10g2140 548 PRINTS Serine/threonine phosphatase family signature 383 409 IPR006186 GO:0016787
Glsi10g2140 548 PRINTS Serine/threonine phosphatase family signature 349 373 IPR006186 GO:0016787
Glsi10g2140 548 PRINTS Serine/threonine phosphatase family signature 413 440 IPR006186 GO:0016787
Glsi10g2140 548 PRINTS Serine/threonine phosphatase family signature 316 343 IPR006186 GO:0016787
Glsi10g2140 548 PRINTS Serine/threonine phosphatase family signature 469 489 IPR006186 GO:0016787
Glsi10g2140 548 PRINTS Serine/threonine phosphatase family signature 491 507 IPR006186 GO:0016787
Glsi10g2140 548 PRINTS Serine/threonine phosphatase family signature 286 313 IPR006186 GO:0016787
Glsi10g2140 548 Gene3D Tetratricopeptide repeat domain 2 156 IPR011990 GO:0005515
Glsi10g2140 548 PIRSF PPPtase_5 1 548 - -
Glsi10g2140 548 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Glsi10g2140 548 SMART tpr_5 45 78 IPR019734 GO:0005515
Glsi10g2140 548 SMART tpr_5 11 44 IPR019734 GO:0005515
Glsi10g2140 548 SMART tpr_5 79 112 IPR019734 GO:0005515
Glsi10g2140 548 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 43 541 - -
Glsi10g2140 548 Pfam Tetratricopeptide repeat 80 112 IPR001440 GO:0005515
Glsi10g2140 548 Pfam Tetratricopeptide repeat 17 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2140 Glsi-ChrGlsi10 16491064 16504394 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2140 261 475 Calmodulin-binding Proteins AT5G63870 34.400 2.26e-38 141