Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2124 ATGCAAAAGTTGTTGATTAGCAAAAGGGCTTCTTCAATTGCTCTGCTTTCCGCTTCCAGAGCCGATTGTGGCACGCTCTGTTTGACGCTTCCCGTGAGTAGAGATCCTCTGTCTTCCCTCTCTGATTTCCGCTCTGGGTTCGGCTCTTTGCTCTTCTCTCTCTGCGACTCTGCCTTGGTGATTCGATTAAGATTGTCAATGGGAAAGAACGAGTTTCTCACACCAAAAGCAATTGCCAATCGAATTAAAGCAAAAGGGCTACAGAAGCTTCGGTGGTACTGCCAGATGTGTCAGAAGCAATGCCGAGACGAGAATGGGTTTAAGTGCCATTGCATGAGTGAAGGGCATCAGCGGCAAATGCAAATCTTTGGACAAAACCAACATCGGATAATTGAGGGCTACTCTGAAGAGTTTGAGAGTTCTTTTCTTGAGCACATGAAGCGCAGCCATCGATTTAGCCGTGTAGCAGCTACCGTAGTTTACAATGAATACATAAATGATAGACACCACGTTCATATGAATTCCACTCAGTGGGCTACGCTAACTGAGTTTGTGAAGTATTTGGGTCGGATTGGCAAGTGTAAGGTGGAAGAAACACCTAAGGGCTGGTTCATCACCTACATAGATAAAGATTCAGAGACCCTCTTTAAAGAGAGGATGAAGAACAAGAGAATTAAAGCAGATATGGTAGAGGAAGAGAAGCAAGAGAGGGAGATAAGGAAACAAATTGAAAAAGCTGAACAATTGATGCAGCCATCTGCTCCTGGGTCTGATCAACCATTACAGGCTGAGCCTCCAAGGGAATTAAAGGTGGAAGATGGAGTTAAGATAGGATTTGCACTTGGGTCATCAGCAAAACCAATAACAAAGGAAAAAGGTGATGGTCCAAAGGTGATGTTTGATGAGATTGAGAATGAGAGAAATGAGGAGAGGAACCCTAGAGGCAGCTTGAAGAGGAAGGAGAGTGGTGGTGGAAAATCAACCTTGGATGAATTGATGAGGGAGGAAGAGAAGAAAAAGGAGAAAATTAATAGGAAGGATTACTGGTTGTGTGAAGGAATAGTTGTTAAGGTCATGTGTAAAGCTTTGGCGGAAAAGGGGTATTACAAACAAAAAGGGGTTGTGCGAAAGGTGATTGACAAGTATGTTGGGGAAATTGAAATGCTTGAAAGCAAGCATGTCCTCAGAGTTGATCAAGTAGAGCTTGAAACTGTGATTCCACAAATTGGGGGTCTTGTGAAGATAGTAAATGGGGCATATCGTGGATCAATAGCAAGGTTGTTAGGGGTGGATACAGATCGCTTTTGTGCTAAGGTGCAAATAGAGAAAGGTGCCTATGATGGTAGGGTACTCAAGGCTGTGGAATATGAGGATATTTGTAAAATAGCCCAGTGA 1395 0.4351 MQKLLISKRASSIALLSASRADCGTLCLTLPVSRDPLSSLSDFRSGFGSLLFSLCDSALVIRLRLSMGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQIFGQNQHRIIEGYSEEFESSFLEHMKRSHRFSRVAATVVYNEYINDRHHVHMNSTQWATLTEFVKYLGRIGKCKVEETPKGWFITYIDKDSETLFKERMKNKRIKADMVEEEKQEREIRKQIEKAEQLMQPSAPGSDQPLQAEPPRELKVEDGVKIGFALGSSAKPITKEKGDGPKVMFDEIENERNEERNPRGSLKRKESGGGKSTLDELMREEEKKKEKINRKDYWLCEGIVVKVMCKALAEKGYYKQKGVVRKVIDKYVGEIEMLESKHVLRVDQVELETVIPQIGGLVKIVNGAYRGSIARLLGVDTDRFCAKVQIEKGAYDGRVLKAVEYEDICKIAQ 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2124 464 Gene3D - 353 406 - -
Glsi10g2124 464 Coils Coil 326 346 - -
Glsi10g2124 464 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 67 462 IPR037321 -
Glsi10g2124 464 FunFam DNA/RNA-binding protein KIN17, putative 127 226 - -
Glsi10g2124 464 MobiDBLite consensus disorder prediction 303 336 - -
Glsi10g2124 464 Coils Coil 222 249 - -
Glsi10g2124 464 Gene3D - 407 463 IPR014722 -
Glsi10g2124 464 FunFam DNA/RNA-binding protein kin17-like 353 406 - -
Glsi10g2124 464 CDD KOW_KIN17 409 462 IPR041995 -
Glsi10g2124 464 FunFam DNA/RNA-binding protein KIN17, putative 407 463 - -
Glsi10g2124 464 Gene3D - 126 226 IPR038254 -
Glsi10g2124 464 SMART Kin17_mid_2 118 244 IPR019447 -
Glsi10g2124 464 Pfam KN17 SH3-like C-terminal domain 345 398 IPR041330 -
Glsi10g2124 464 SUPERFAMILY beta-beta-alpha zinc fingers 92 132 IPR036236 -
Glsi10g2124 464 Pfam Domain of Kin17 curved DNA-binding protein 118 243 IPR019447 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2124 Glsi-ChrGlsi10 16310938 16316147 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2124 67 463 C2H2 Transcription Factor Family AT1G55460 71.117 0.0 588