Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2095 ATGTCTACCCAGTACCCACCACGAATAAAAAAAGCTGCAGTGAGAGAAAGAGCTTGGCTGGAAATTGACTCGGTCGTTGGTTTCTTTCCGAACTCAATGGCCACTGTGAAGAAAAATGAAGCAAAAGAAGCCATTTTGGAAAGAGTCTCTGTGAAACCAGAAGATCCTCCTCAATCTGGTTTTTCCTGGGCCAAGGTTTCGATTAAGAACTTTCAAACTATTAATTTCAACAAGCTTCTGGGCTTCTGCTTCTCTTGCTGTACTTCAAAGCAGAGGATCAATAGGAGGGCGTTGCAGAAGAGCATTAAGGAGTACAATGATACAAAAACTCTAGCCTCATTTGCCAACATTTCTTTCAAAAGTGATGCCAGCAAGCGAAGGTACATAGCAGAAGAGATTAGGAAGATTGGAAAGGGAAATATTACTGCTAAAATTTTTACTTATCGAGAGCTATGTGTTGCCACTCAGAACTTTCACCCAGACAACCTGATTGGTGAAGGAGGCTTTGGCAAAGTATTCAAAGGACGCATTGAAAGCACTAATCAAGTTGTTGCTGTGAAGCAACTTGACAGGAATGGGTTTCAAGGAAACAGAGAATTTCTTGTAGAGGTTTTGCTTTTGAGTCTCTTGGACCACCCTAACCTTGTCAATCTGGTAGGGTATTGTGCTGATGGTGATCAGAGGATTCTGGTATATGAATACATGGTCAATGGTTCTTTAGAAGATCACCTTCTTGAATTAGCTCCAGATAGAAAGCCTTTGGATTGGGATACCAGAGTGAAAATTGCTGAAGGTGCAGCGAAAGGACTTGAGTATTTACATGAAGTAGCAAGCCCACCGGTGATATACCGAGATTTCAAGGCATCAAACATACTATTGGATGAAGATTTCAATCCGAAGCTCTCTGATTTCGGACTCGCAAAGCTTGGTCCAACTGGGGACAATTCGCATGTATCCACAAGGGTAATGGGAACTTATGGCTACTGTGCTCCTGAGTATGCTCTGACAGGGCAGTTGAGTACGAAATCGGATGTGTACAGCTTTGGAGTGGTGTTTTTGGAGATGATCTCAGGAAGAAGAGTGATTGATAATACAAGACCAACTGAAGAACAAAATTTAGTCCTTTGGGCACAACCACTATTCAAAGACAGAAGGAAATTTACTTTAATGGCCGATCCATCGCTAGAAAGGGATTACCCCATAAAGGGTCTATACCAAGCTCTAGCAGTTGCAGCAATGTGTCTCCAAGAGGAAGCTGCTACCCGACCTTTGATCAGCGACGTAGTCACAGCTCTCGAGTTTTTGGCAACAACAAAGAATGTGGAAGTGGAAGAGGATGAAGATGAAGATGAAGATGATGAAGAAGAAGAACATATTTTTGAGTCTTCTGATGATGGAGACAGCAGTGGGGACAATGAATCTGATAGAGTATCTGATGATACAAAAAAAGGATTACCCACTTGTTTTACAGCTCAAATAAGGCCCTCAAGGCCACCTATTTACAGGTTTGCCACAAAACCCACTTCCAAAACGGCTCCTCGTGTAAGGGACTGTGGGAGAAAGCTGGGGAGAGTTGTGGAGTTGATTGCCATGGGGGTTTCTACCCACAAGAGTACTCCTTTAAGACCATTTTGCCCCTCCTGCTTCTGGGTTTCCCGGTCTTGTTCCCGCCCCTTTCGTGTGGCTTTATCTTCTTGGTCTTTGTTGGCTCCCTCCGAAGCCCACCACAGCAGAAGAAAAATTCTCTCAATTCAGATTGCCAGCAATGGCCTCCATAATAGATCTGTGCCTAGTCATTCTCTTCAATTTAGAGAAGGTTCACACTTTCTATCTAGAACATTTATTGGAAAGAATAAATACAATGACATGGAATACAACCGTAATCTTCCATATAATCCTCCAGTTCGTCTTTCATTCATGAAAATTTCAACTGCATCGTCTGGCATGTTGGATGAAATGACAGAGGAAGAAGAGTTGAATTCTTCACATTATTGTGAAGCACAAACTAGAATGGTAAGTTTTTCTCCTTGCAATCAGGGAGCATCCAATACTGCTGCTGAAGGAGAATTGTTTGGTGATAGATCAGGCTGGACTTGGGCAAGATATAACTTGAGTGAAATTAAAAAGGAAAATAAGTTTGAGAGGAATAATAGTAGTGCTTATGCATCTGATATATTTGTTTCCAATGGTCAGGAGCAGGCTCTTTCTAAGAATGGAGGGTGCAATCTTCTTGTACTGCATGATCATGGTGAACCTGTCTCATCTTCTGTTATCCATTCGGAATTAAACAATTCAAAGGTGATGACAGACTCTGAAAGGGTGGGTAACCAGTCAACTGGATCTTCCTTGGTAATCAGTAAAGATACAAGTGCTGAAGTAAATGGCAATCATGGTTTGGATGCATCTGCAAAGTACACAACCAATGCAACATTTGGTAGACAGGCACATACTACTGGTGATTCGAAACTTCGGGGCAGGCTTTGTAGCATCTATAAAGATATATTGGTTGTTGATAATGTTTCTCTAGCTAAGAAAGTTGTTGGGATGCTTACAAATAAGTACAGGCATCTTATTCATGCATGTGATACGGAGGTGGCCAAGATTAATGTCAAAGAAGAAACACCTGTTGATCATGGGGAGATAATATGCTTCAGTATTTATTCTGGTCCAGAAGCTGATTTTGGAAGTGGGAAGTCCTGTATCTGGGTGGATGTTCTTGATGGTGGAGGAAAAGAAATTTTGTTTGAATTTGATTCATTTTTTAATGACCAATCCATCAAAAAGGTCTGGCATAACTATAGCTTCGATAATCATGTTATAGAGAACTATGGACTTAGAGTTTTTGGTTTTCATGCTGACACAATGCACATGGCACGATTATGGAATTCATCAAGGCGTTTGGATGGTGGCTATTCTCTTGAAGCACTTACAAGCGACAAAAGGGTCATGTCTAGGGCTGAGCTGAACTGTGAAAAGGATTTGATTGGTAAAGTGTCAATGAAAACTATATTTGGGCGGAAAAAGTTGAAAAAAGATGGATCTGAGGGTAAAATGATTTCCATTGCTCCTGTTGAAGAGCTACAAAGAAATGAGCGTATACCTTGGATATGTTATTCTGCCTTAGATGCTAGAAGTACTTTGAAGCTTTACGAGAGCCTAAAGAGCCATCTGTCAGAAATGCCCTGGAAAGTTGACGGAGTACGAGTGGAGGGACCTGTTTCTGGAAAATCCATGTATGATTTTTATGAGGAATATTGGCGGCCATTTGGTGAACTTCTAGTGAAAATGGAATCTGAGGGAATGCTAGTTGACCGTGCATATCTTGCTGAGATAGAGAAGGTGGCCAAAGCAGAGCAAGAGGTAGCTGTTAATAGGTTCCGGAAATGGGCATCTAGGTATTGTCCTGATGCCAAGTATATGAATGTGGGAAGCGATGCTCAGTTGCGCCAGCTGCTTTTCGGCGGCATTGTGAACAGAAAAGACCACAATGTGGCACTTCCAACTGAGCGGAACTTCCAGATTCTTAATGTTGATAAAGTGATCAAAGAAGGCAAGAAGGCTCCCACAAAATATCGTGATATCAAGTTGAAGAGTCTTGGTTATCGCCTGAAAACTGATATGTACACAGAAACTGGTTGGCCTTCCGTCAGTGGTGATGCTTTAAAGGCCCTGGCTGGAAATGTTTCTGCTGAATATGACTTTATAGATGAGGCTTGTGACCTGGATCTTGATGACAAAGACGGGAATCCTCCTCAGAGTGAAGTTGCACCAGCAGAAATAGACAAATCGGCTTATGGTACAGCTTTTTCTGCTTTTCCAACAGAGGATGAAGGGAGAGAAGCTTGCCATGCAATTGCTGCTTTATGTGAAGTCTGTTCAATTGACTCTTTAATATCTAACTTCATCCTTCCCTTGCAGGGAAGTAATATTTCAGGAAGGAATGGCCGCATTCATTGTTCCTTAAATATCAACACGGAGACAGGACGCCTGTCAGCTAGAAGGCCAAATCTGCAGAATCAACCTGCTTTGGAGAAGGACCGGTACAAAATCCGTAAAGCATTTATAGCTGCACCTGGGAATTCTCTTATAGTTGCTGATTATGGACAGCTGGAACTTAGGATTCTTGCACATCTTGCCAGCTGTAAGAGTATGCTGGAAGCCTTCAAAGCTGGTGGAGATTTCCATTCAAGGACTGCAATGAATATGTATCCATATATTCGTGAAGCAGTTGAAAAAAAACAAGTGCTTCTTGAGTGGCATCCTGAGCCAGGTGAAGATAAACCCCCCGTTCCTCTGCTGAAGGATGCTTTTGGTTCTGAAAGAAGGAAAGCTAAAATGCTTAACTTTTCAATTGCATATGGAAAGACTCCAGTGGGGCTTTCCCGGGACTGGAAGGTCTCTGTGAGAGAAGCTAAGAATACAGTTGACCTCTGGTACAATGATAGAAAAGAAGTATTGGCATGGCAAGAACAGCGTAAAAAGGAAGCCTGTGAATTTCATTGTGTACACACATTGCTAGGGCGAGCCCGGTCGTTCCCTTTAATGGCTCGAGCTACATCATATCAGAAAAGTCACATTGAGCGAGCAGCTATTAATACGCCGGTTCAGGGTAGCGCAGCTGATGTAGCCATGTGTGCCATGTTACAAATATCCAAAAATACACGGTTGAAAGAGCTTGGATGGAAGTTACTTCTACAGGTTCACGATGAAGTCATATTAGAAGGGCCAACAGAGTCAGCTGAGGTTGCAAAGGCTATAGTTGTTGATTGCATGTCCAAACCCTTTGATGGAAAAAACATTCTTCAAGTTGATCTCTCTGTCGATGCCAATTGTGCTCAAAACTGGTATTCTGCAAAATAG 4860 0.4216 MSTQYPPRIKKAAVRERAWLEIDSVVGFFPNSMATVKKNEAKEAILERVSVKPEDPPQSGFSWAKVSIKNFQTINFNKLLGFCFSCCTSKQRINRRALQKSIKEYNDTKTLASFANISFKSDASKRRYIAEEIRKIGKGNITAKIFTYRELCVATQNFHPDNLIGEGGFGKVFKGRIESTNQVVAVKQLDRNGFQGNREFLVEVLLLSLLDHPNLVNLVGYCADGDQRILVYEYMVNGSLEDHLLELAPDRKPLDWDTRVKIAEGAAKGLEYLHEVASPPVIYRDFKASNILLDEDFNPKLSDFGLAKLGPTGDNSHVSTRVMGTYGYCAPEYALTGQLSTKSDVYSFGVVFLEMISGRRVIDNTRPTEEQNLVLWAQPLFKDRRKFTLMADPSLERDYPIKGLYQALAVAAMCLQEEAATRPLISDVVTALEFLATTKNVEVEEDEDEDEDDEEEEHIFESSDDGDSSGDNESDRVSDDTKKGLPTCFTAQIRPSRPPIYRFATKPTSKTAPRVRDCGRKLGRVVELIAMGVSTHKSTPLRPFCPSCFWVSRSCSRPFRVALSSWSLLAPSEAHHSRRKILSIQIASNGLHNRSVPSHSLQFREGSHFLSRTFIGKNKYNDMEYNRNLPYNPPVRLSFMKISTASSGMLDEMTEEEELNSSHYCEAQTRMVSFSPCNQGASNTAAEGELFGDRSGWTWARYNLSEIKKENKFERNNSSAYASDIFVSNGQEQALSKNGGCNLLVLHDHGEPVSSSVIHSELNNSKVMTDSERVGNQSTGSSLVISKDTSAEVNGNHGLDASAKYTTNATFGRQAHTTGDSKLRGRLCSIYKDILVVDNVSLAKKVVGMLTNKYRHLIHACDTEVAKINVKEETPVDHGEIICFSIYSGPEADFGSGKSCIWVDVLDGGGKEILFEFDSFFNDQSIKKVWHNYSFDNHVIENYGLRVFGFHADTMHMARLWNSSRRLDGGYSLEALTSDKRVMSRAELNCEKDLIGKVSMKTIFGRKKLKKDGSEGKMISIAPVEELQRNERIPWICYSALDARSTLKLYESLKSHLSEMPWKVDGVRVEGPVSGKSMYDFYEEYWRPFGELLVKMESEGMLVDRAYLAEIEKVAKAEQEVAVNRFRKWASRYCPDAKYMNVGSDAQLRQLLFGGIVNRKDHNVALPTERNFQILNVDKVIKEGKKAPTKYRDIKLKSLGYRLKTDMYTETGWPSVSGDALKALAGNVSAEYDFIDEACDLDLDDKDGNPPQSEVAPAEIDKSAYGTAFSAFPTEDEGREACHAIAALCEVCSIDSLISNFILPLQGSNISGRNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRKAFIAAPGNSLIVADYGQLELRILAHLASCKSMLEAFKAGGDFHSRTAMNMYPYIREAVEKKQVLLEWHPEPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTPVGLSRDWKVSVREAKNTVDLWYNDRKEVLAWQEQRKKEACEFHCVHTLLGRARSFPLMARATSYQKSHIERAAINTPVQGSAADVAMCAMLQISKNTRLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVDCMSKPFDGKNILQVDLSVDANCAQNWYSAK 1619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2095 1619 FunFam Serine/threonine-protein kinase CDL1-like 129 234 - -
Glsi10g2095 1619 MobiDBLite consensus disorder prediction 442 462 - -
Glsi10g2095 1619 Pfam DNA polymerase family A 1284 1616 IPR001098 GO:0003677|GO:0003887|GO:0006260
Glsi10g2095 1619 MobiDBLite consensus disorder prediction 463 482 - -
Glsi10g2095 1619 CDD DNA_polA_I_Ecoli_like_exo 852 1095 - -
Glsi10g2095 1619 FunFam DNA polymerase I 835 1097 - -
Glsi10g2095 1619 Pfam Protein kinase domain 159 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g2095 1619 SMART polaultra3 1349 1579 IPR001098 GO:0003677|GO:0003887|GO:0006260
Glsi10g2095 1619 CDD DNA_pol_A_plastid_like 1212 1616 - -
Glsi10g2095 1619 SUPERFAMILY Protein kinase-like (PK-like) 144 440 IPR011009 -
Glsi10g2095 1619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 281 293 IPR008271 GO:0004672|GO:0006468
Glsi10g2095 1619 ProSitePatterns Protein kinases ATP-binding region signature. 164 187 IPR017441 GO:0005524
Glsi10g2095 1619 FunFam DNA polymerase I 1370 1539 - -
Glsi10g2095 1619 Gene3D Taq DNA Polymerase; Chain T, domain 4 1099 1319 - -
Glsi10g2095 1619 Gene3D Transferase(Phosphotransferase) domain 1 235 461 - -
Glsi10g2095 1619 Gene3D - 1325 1615 - -
Glsi10g2095 1619 ProSiteProfiles Protein kinase domain profile. 158 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g2095 1619 PRINTS DNA-polymerase family A (pol I) signature 1316 1338 IPR002298 GO:0003887|GO:0006261
Glsi10g2095 1619 PRINTS DNA-polymerase family A (pol I) signature 1391 1404 IPR002298 GO:0003887|GO:0006261
Glsi10g2095 1619 PRINTS DNA-polymerase family A (pol I) signature 1532 1548 IPR002298 GO:0003887|GO:0006261
Glsi10g2095 1619 PRINTS DNA-polymerase family A (pol I) signature 1361 1384 IPR002298 GO:0003887|GO:0006261
Glsi10g2095 1619 PRINTS DNA-polymerase family A (pol I) signature 1562 1575 IPR002298 GO:0003887|GO:0006261
Glsi10g2095 1619 PRINTS DNA-polymerase family A (pol I) signature 1339 1354 IPR002298 GO:0003887|GO:0006261
Glsi10g2095 1619 SUPERFAMILY DNA/RNA polymerases 1078 1619 IPR043502 -
Glsi10g2095 1619 CDD STKc_IRAK 164 433 - -
Glsi10g2095 1619 Pfam 3'-5' exonuclease 912 1057 IPR002562 GO:0003676|GO:0006139|GO:0008408
Glsi10g2095 1619 FunFam Serine/threonine-protein kinase PBS1 235 451 - -
Glsi10g2095 1619 Gene3D - 1370 1539 - -
Glsi10g2095 1619 MobiDBLite consensus disorder prediction 440 485 - -
Glsi10g2095 1619 Gene3D Phosphorylase Kinase; domain 1 130 234 - -
Glsi10g2095 1619 Gene3D - 836 1097 IPR036397 GO:0003676
Glsi10g2095 1619 SUPERFAMILY Ribonuclease H-like 834 1062 IPR012337 -
Glsi10g2095 1619 PANTHER DNA POLYMERASE I 803 1619 IPR002298 GO:0003887|GO:0006261
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2095 Glsi-ChrGlsi10 15469655 15488188 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2095 140 463 Glycoside Hydrolase AT3G07070 68.210 3.63e-151 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Glsi10g2095 DNA_pol_A 5.6e-71 No_clan