Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2066 ATGCAGCCCATGGCGCCGATGCCATCGGATCAGCAGAACCAGCAGTATCAGCAGGTGCCATCACAGCAACAGTGGATGATGATGCCACCACAGCAGCAGCAGCAGCAGCAAGTGCCACCACCGGTCGGGTGGTCTCCACAGGCGATACAACCACCCCAGCAAACCCAAGTCCAGTTTCAGTCGACGCAGCATTATGGTACCGCTCAAAATGTTGGCACCGGTGAGATCAGGTCGCTTTGGATCGGCGACTTGCAGCAGTGGATGGATGAGAGTTACCTGTCGAGTTGCTTCTCTCACACTAGCGAGGTTATCTCTGCAAAGGTCATTCGTAATAAAACAACAGGCATGGCAGAGGGTTATGGTTTCATCGAGTTTGCATCCCGTGCTGCAGCAGAGAGGATCTTGCAGGGATATAATGGCACATTGATGCCAAATTCTGATCAGAACTTTCGATTGAACTGGGCAACACTTGGTCCTGGTGAGCGGCGTCAAGAGGATGGTCAAGATTATACAGTTTTTGTTGGTGATTTGGCTGCTGATGTTACTGATTATGTACTCCAAGAAACTTTTCGAGCTCACTATCCATCGGTTAAGGGAGCAAAGGTTGTCACTGATCGGACCACTGGAAGGTCTAAGGGCTATGGGTTTGTCAAATTTGGTGATGAAAATCAACAAATGCGTGCAATGACAGAGATGAATGGTGTCTATTGTTCTACCAGGCCAATGCGGGTCGGACCAGCTGCTAACAAGAAACCCATGGCTGGTCAGCAATATCAGACAGTCTTTTCTGCATCTTCTTCCAAGGACGCTGAGAGGCTCTCATTGTTGGGGGGCCTGGAACTGATATCAGCTGAAATGATACCACTTTTATGCGCCTCATGTTTAGCTACGTACCAGAATACTTCAGGAAATCAGGGCGAGAATGATCCTAATAATACAACAATATTTGTTGGTAATTTGGACCCTAGTGTCTCAGATGACATGTTGAGACAAGTCTTTGGTCAGTTTGGGGAGTTAATACATGTGAAAATCCCCGTAGGAAAGCGCTGTGGTTTTGTTCAGTTTGCCAACAGAACAAGTGCCGAGCAAGCATTGTCAATGTTGAATGGAACACCATTAGTAGGACAAAGCATCAGACTCTCATGGGGGCGAAGTCCTTCAAACAAGCAGTCTCCTCCAGAGCAGGCCCAATGGAATGGTGGGGCATACTATGGATCCTAA 1221 0.4808 MQPMAPMPSDQQNQQYQQVPSQQQWMMMPPQQQQQQQVPPPVGWSPQAIQPPQQTQVQFQSTQHYGTAQNVGTGEIRSLWIGDLQQWMDESYLSSCFSHTSEVISAKVIRNKTTGMAEGYGFIEFASRAAAERILQGYNGTLMPNSDQNFRLNWATLGPGERRQEDGQDYTVFVGDLAADVTDYVLQETFRAHYPSVKGAKVVTDRTTGRSKGYGFVKFGDENQQMRAMTEMNGVYCSTRPMRVGPAANKKPMAGQQYQTVFSASSSKDAERLSLLGGLELISAEMIPLLCASCLATYQNTSGNQGENDPNNTTIFVGNLDPSVSDDMLRQVFGQFGELIHVKIPVGKRCGFVQFANRTSAEQALSMLNGTPLVGQSIRLSWGRSPSNKQSPPEQAQWNGGAYYGS 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2066 406 Gene3D - 157 261 IPR012677 -
Glsi10g2066 406 MobiDBLite consensus disorder prediction 383 397 - -
Glsi10g2066 406 Gene3D - 76 156 IPR012677 -
Glsi10g2066 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 249 IPR000504 GO:0003723
Glsi10g2066 406 Gene3D - 296 394 IPR012677 -
Glsi10g2066 406 MobiDBLite consensus disorder prediction 1 44 - -
Glsi10g2066 406 SUPERFAMILY RNA-binding domain, RBD 50 159 IPR035979 GO:0003676
Glsi10g2066 406 CDD RRM1_SECp43_like 78 156 - -
Glsi10g2066 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 378 IPR000504 GO:0003723
Glsi10g2066 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 145 IPR000504 GO:0003723
Glsi10g2066 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 236 IPR000504 GO:0003723
Glsi10g2066 406 MobiDBLite consensus disorder prediction 383 406 - -
Glsi10g2066 406 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 54 389 - -
Glsi10g2066 406 FunFam Polyadenylate-binding protein RBP47B 76 156 - -
Glsi10g2066 406 FunFam Polyadenylate-binding protein RBP45C 160 254 - -
Glsi10g2066 406 CDD RRM2_SECp43_like 169 248 - -
Glsi10g2066 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 157 IPR000504 GO:0003723
Glsi10g2066 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 385 IPR000504 GO:0003723
Glsi10g2066 406 FunFam Polyadenylate-binding protein RBP45C 292 395 - -
Glsi10g2066 406 SUPERFAMILY RNA-binding domain, RBD 168 388 IPR035979 GO:0003676
Glsi10g2066 406 SMART rrm1_1 78 153 IPR000504 GO:0003723
Glsi10g2066 406 SMART rrm1_1 314 381 IPR000504 GO:0003723
Glsi10g2066 406 SMART rrm1_1 171 245 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2066 Glsi-ChrGlsi10 14853101 14857281 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2066 301 391 Eukaryotic Initiation Factors Gene Family AT4G34110 36.735 1.22e-09 58.2