Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2065 ATGAGAAAGCCCAAATCAAGGGACTTTCGCAAGCAACAAAAGCTTCTAGAGAAAGATGAGATTAAACTCTTGGATTCGTGGATTCAATCCCAGCAACCGGACTCCGGCTCCAACCCCATGTCCTTTCCTCCGTTACCCTCCAAAGCACCCATTGGCCGCATCAACGACAACGCGTTTTCGCGCTATGCGGGTGTCGCAAGGTTCGACCAGTTGCCAATTTCTAAGAAAACCAAGGATGGGTTGCGAGAAGCTAAGTTCACCAAAATGACTGACATACAGAGGGCTTCTTTGCCCCACGCGCTTTGTGGACGAGATATTCTCGGTGCGGCAAAAACTGGTTCGGGAAAGACCTTGGCTTTTATTATTCCGGTTTTGGAAAAGTTATATAGGGAGAATTGGGGGCCTGAAGATGGAGTAGGCAGCATCATCATATCCCCTACAAGAGAACTAGCTGCTCAACTATTTGATGTATTAAAAAGTGTTGGTAAGCACCATAGTTTTAGTGCTGGCCTCCTGATTGGTGGCCGCAAGGATGTTGACATGGAGAAAGAATGTGTAAATTTGCTGAACACATTGATCTGCACGCCTGGTCGGCTTCTTCAACACATGGATGAAACTCCAAATTTTGATTGTTCACGTATTCAGGTATTGGTGCTAGATGAGGCGGATCGTATTCTTGAGAATGGATTTAAGAATGACCTAGATGCAATCATTGCACAACTTCCAAAGCGCAGACAAACCATGCTTTTCTCAGCAACTCAGACAAAGTCAGTTCAAGATCTTGCACGACTAAGTTTAAAGGACCCAGAGTATCTGAGCGTCCATGAAGAGTCTGTGACTGCCACTCCTACTCTCTTGAGGCAAATTGTAATGATTGTTCCTCTAGACCAAAAATTAGATATGCTGTGGAGTTTCATAAAGTCACATCTTAACTCCAAAACACTTGTCTTTCTTTCTAGCTGTAAACAGGTAAAATTTGTCTTTGAAGCATTCAAGAAACTACACCCTGGCATACCCTTGAAATGCCTTCATGGGAGGATGAAGCAGGAGAGAAGGATGGCAATATATTCTGAGTTTTGTGAGAAGCGCTCAGTTCTCTTCTCAACAGATGTGGCTGCAAGAGGCCTTGATTTTAATAAGGCAGTTGACTGGGTTGTTCAGGTGGATTGTCCTGAAAATGTAGCATCTTACATACATAGAGTTGGTCGTACTGCTCGCTACAAGTCTGGCGGGAAGTCAGTTTTATTTTTGATGCCTTCAGAGATTAAAATGCTTGAAAATTTGGAAGCAGCAAAAGTTCCAGTACATTTTAATAAGCCTAGGAAAGAACTACTGCAGCCAGTTTCTGGTTCATTGGCATCTTTGCTGGTCAAGTACCCAGAACTCCAGCAACTGGCACAAAGGGCCCTCATCACATATTTGAGATCCATTCTTATCCAGAAGGATAAAGAAATCTTTGATGTTATGAAATTGCCAATTGAGGACTTTGCATCATCATTGGGTCTGCCAATGACCCCCAAAATCCGTTTTCTTAACCGGAAAATTAAGTCTAAAGCTGTGTCAACAAAACCAATTTTAGCTGAACCAGAAGATTCAAACAAGGAAATTGCATTGGAGGTTCCAAGAAAGAAGATTAACCTAAACCATCCTGAGGAAGAGGAAGCAGAAAAAGGTCTTCTTTTGCCTGATGATTCCTCTGATGAAGGGGAAGGAAAAGCACCTGAAATTTTAGATGTCATACCCCCAACTCGTGTTTTAAAAAAAAAGAAGCTCAAGATCAACATACATAGACCTGTGGGGACTAGAGTTGTATTTGATGATGAAGGCAATGCGCTGCCTCCGCTAGCAAGGATTGCTGAGACACAAAGTGGCAAGGAAACATTGCTGCTTGACCCAGAACAAAAAGCTGAATACTATAGAAAAATGCGGGAGGAGTTGAAGAAGGTGGACAAGGAAGACAAGCTTCTGCAACATCATCGTCTTAGAACAAAGAGAATCAAAGAAAAGATGAAGTGGAAGGAAGGGAGTGCAGAAGAAGACAACGATGATGTTTCTGGGTCAGATGTAGATGAAACTGCAGATAGACAGCATAAGAAGAGTAAGATATATTTTGATAGTGACAGTGATGATAGTAAGAGAACTGAAGTCACAGGTAAAGGGGGTATAAGCTCTAAATCTGTTAGTTTGGAAGAGCAAGAAGCACTGGCTCTGAAATTGTTAAATTCCATGCACTCATAG 2238 0.4245 MRKPKSRDFRKQQKLLEKDEIKLLDSWIQSQQPDSGSNPMSFPPLPSKAPIGRINDNAFSRYAGVARFDQLPISKKTKDGLREAKFTKMTDIQRASLPHALCGRDILGAAKTGSGKTLAFIIPVLEKLYRENWGPEDGVGSIIISPTRELAAQLFDVLKSVGKHHSFSAGLLIGGRKDVDMEKECVNLLNTLICTPGRLLQHMDETPNFDCSRIQVLVLDEADRILENGFKNDLDAIIAQLPKRRQTMLFSATQTKSVQDLARLSLKDPEYLSVHEESVTATPTLLRQIVMIVPLDQKLDMLWSFIKSHLNSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGKSVLFLMPSEIKMLENLEAAKVPVHFNKPRKELLQPVSGSLASLLVKYPELQQLAQRALITYLRSILIQKDKEIFDVMKLPIEDFASSLGLPMTPKIRFLNRKIKSKAVSTKPILAEPEDSNKEIALEVPRKKINLNHPEEEEAEKGLLLPDDSSDEGEGKAPEILDVIPPTRVLKKKKLKINIHRPVGTRVVFDDEGNALPPLARIAETQSGKETLLLDPEQKAEYYRKMREELKKVDKEDKLLQHHRLRTKRIKEKMKWKEGSAEEDNDDVSGSDVDETADRQHKKSKIYFDSDSDDSKRTEVTGKGGISSKSVSLEEQEALALKLLNSMHS 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2065 745 MobiDBLite consensus disorder prediction 667 729 - -
Glsi10g2065 745 MobiDBLite consensus disorder prediction 688 716 - -
Glsi10g2065 745 SMART helicmild6 325 408 IPR001650 -
Glsi10g2065 745 Pfam Domain of unknown function (DUF4217) 451 508 IPR025313 -
Glsi10g2065 745 Gene3D - 284 524 IPR027417 -
Glsi10g2065 745 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Glsi10g2065 745 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Glsi10g2065 745 PANTHER RNA HELICASE 65 542 - -
Glsi10g2065 745 SMART DUF4217_3 447 510 IPR025313 -
Glsi10g2065 745 MobiDBLite consensus disorder prediction 547 574 - -
Glsi10g2065 745 Pfam Helicase conserved C-terminal domain 298 407 IPR001650 -
Glsi10g2065 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 428 IPR027417 -
Glsi10g2065 745 Gene3D - 54 278 IPR027417 -
Glsi10g2065 745 Pfam DEAD/DEAH box helicase 90 261 IPR011545 GO:0003676|GO:0005524
Glsi10g2065 745 CDD DEADc_DDX10 77 275 - -
Glsi10g2065 745 SMART ultradead3 85 289 IPR014001 -
Glsi10g2065 745 CDD SF2_C_DEAD 286 417 - -
Glsi10g2065 745 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 456 IPR001650 -
Glsi10g2065 745 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2065 Glsi-ChrGlsi10 14844528 14850017 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2065 65 429 Eukaryotic Initiation Factors Gene Family AT3G19760 28.649 3.01e-39 148