Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2054 ATGGGTGGCTGCTTGACGAAAGGGAAAGATTCAGAGCCTGCATATAATGGTTACAGATCAGGCGGGGCTACTGGAGTTCACAATCAGAAGACCCACGAGCCCTTCGTCAACCAATCCAAAGCCCCTTATCATCAACCCTACCAATTACCTGCAAGACCTGCTGGGACGGCTCAGACGGCACCTCCGGCGCCATGGAAGCCGGCGCCGAGCCCCAAACCAGTTCACAAGTCAGACACAATTCTTGGGAAGCCATTTGAGGATGTGAAACAGTTCTATTCGATTGGGAAAGAACTGGGTCGAGGTCAATTTGGGGTTACCTATCTGTGCACTGAGAATTCAACTGGCCGGCCATACGCTTGCAAGTCGATTTCGAAGAGGAAGCTTGTGAGCAAAGCTGATAAGGACGATATAAAGAGGGAGATTCAGATTATGCAACATTTGAGTGGACAGCCCAACATTGTTGAGTTCAAAGGTGCTTATGAAGATAAGCATTCGGTTCATCTTGTGATGGAGCTATGCGCAGGTGGTGAACTCTTTGATCGAATTATTGCCAAGGGGCATTACAGCGAAAGGGCTGCTGCTTCGATTTGTAGACAAATTGTTAATGTTGTTCATATCTGCCATTTTATGGGCGTGATGCATAGGGATCTGAAGCCTGAGAATTTTTTGTTATCCAGTAAGGATGAAAATGCACTTCTGAAAGCCACAGATTTTGGCCTGTCGGTTTTCATCGAAGAAGGAAAGGTCTACCGGGATATAGTCGGAAGTGCTTATTATGTTGCTCCAGAAGTTCTAAGGCGCAGATATGGAAAGGAAATAGATATATGGAGTGCAGGAGTTATATTGTATATCTTACTTAGTGGTGTACCTCCATTTTGGGCTGAGTCGGAAAAGGGAATATTTGATGCCATATTGCAAGGTCATATTGATTTTGAAAGTCAACCATGGCCAAGCATATCAAATAGTGCCAAGGACCTTGTTAGTAAGATGCTCATACAGGACCCAAAAAAACGCATTACTTCTGCTCAAGTTCTAGAGCACCCGTGGATCAGAGAAGATGGAAATGCTTCTGACAAGCCGATAGACAGTGCAGTACTCTCCAGAATGAAGCAATTCAGAGCAATGAATAAACTAAAGAAACTTGCCCTGAAGGTCATTGCAGAAAATCTCTCTGCAGAAGAAATCCAAGGCTTGAAGGCTATGTTTACAAATATGGACACAGACAATAGTGGAACAATCACCTATGAAGAACTAAAGGCGGGATTGCAAAGACTTGGCTCAAAGCTAACAGAAGCTGAAGTGCATCAGCTCATGGAAGCTGCTGATGTAGATGGAAATGGCACAATTGACTACATAGAATTCATCACTGCTACAATGCATAGACATAAGATAGAAAGAGATGAGCATCTTTACAAGGCTTTCCAATATTTTGACAAGGATAACAGTGGGTTTATTACAAGAGATGAACTTGAAACAGCAATGAAAGAATATGGGATGGGTGATGAAGGCACAATTAGGGAAATCATATCAGAAGTTGATACAGATAATGATGGTAGAATCAACTATGAAGAGTTCTGTGCGATGATGAGGAGTGGAAATCCACAACAAGGCAAATTATTCTAA 1623 0.4307 MGGCLTKGKDSEPAYNGYRSGGATGVHNQKTHEPFVNQSKAPYHQPYQLPARPAGTAQTAPPAPWKPAPSPKPVHKSDTILGKPFEDVKQFYSIGKELGRGQFGVTYLCTENSTGRPYACKSISKRKLVSKADKDDIKREIQIMQHLSGQPNIVEFKGAYEDKHSVHLVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDENALLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRYGKEIDIWSAGVILYILLSGVPPFWAESEKGIFDAILQGHIDFESQPWPSISNSAKDLVSKMLIQDPKKRITSAQVLEHPWIREDGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSAEEIQGLKAMFTNMDTDNSGTITYEELKAGLQRLGSKLTEAEVHQLMEAADVDGNGTIDYIEFITATMHRHKIERDEHLYKAFQYFDKDNSGFITRDELETAMKEYGMGDEGTIREIISEVDTDNDGRINYEEFCAMMRSGNPQQGKLF 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2054 540 SMART serkin_6 92 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g2054 540 Gene3D - 359 533 - -
Glsi10g2054 540 ProSiteProfiles EF-hand calcium-binding domain profile. 393 428 IPR002048 GO:0005509
Glsi10g2054 540 ProSiteProfiles EF-hand calcium-binding domain profile. 429 464 IPR002048 GO:0005509
Glsi10g2054 540 ProSitePatterns Protein kinases ATP-binding region signature. 98 121 IPR017441 GO:0005524
Glsi10g2054 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Glsi10g2054 540 Pfam Protein kinase domain 92 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g2054 540 CDD EFh 472 530 IPR002048 GO:0005509
Glsi10g2054 540 ProSitePatterns EF-hand calcium-binding domain. 442 454 IPR018247 -
Glsi10g2054 540 FunFam Calcium-dependent protein kinase 1 94 177 - -
Glsi10g2054 540 CDD STKc_CAMK 91 349 - -
Glsi10g2054 540 Gene3D Transferase(Phosphotransferase) domain 1 178 358 - -
Glsi10g2054 540 MobiDBLite consensus disorder prediction 1 76 - -
Glsi10g2054 540 ProSitePatterns EF-hand calcium-binding domain. 478 490 IPR018247 -
Glsi10g2054 540 FunFam calcium-dependent protein kinase 1 178 357 - -
Glsi10g2054 540 ProSiteProfiles EF-hand calcium-binding domain profile. 465 500 IPR002048 GO:0005509
Glsi10g2054 540 ProSitePatterns EF-hand calcium-binding domain. 406 418 IPR018247 -
Glsi10g2054 540 FunFam Calcium-dependent protein kinase 1 358 533 - -
Glsi10g2054 540 SUPERFAMILY EF-hand 389 529 IPR011992 -
Glsi10g2054 540 SMART efh_1 504 532 IPR002048 GO:0005509
Glsi10g2054 540 SMART efh_1 397 425 IPR002048 GO:0005509
Glsi10g2054 540 SMART efh_1 433 461 IPR002048 GO:0005509
Glsi10g2054 540 SMART efh_1 469 497 IPR002048 GO:0005509
Glsi10g2054 540 ProSitePatterns EF-hand calcium-binding domain. 513 525 IPR018247 -
Glsi10g2054 540 MobiDBLite consensus disorder prediction 22 44 - -
Glsi10g2054 540 PANTHER SERINE/THREONINE-PROTEIN KINASE 87 525 - -
Glsi10g2054 540 Gene3D Phosphorylase Kinase; domain 1 94 177 - -
Glsi10g2054 540 Pfam EF-hand domain pair 398 458 IPR002048 GO:0005509
Glsi10g2054 540 Pfam EF-hand domain pair 468 530 IPR002048 GO:0005509
Glsi10g2054 540 ProSiteProfiles EF-hand calcium-binding domain profile. 505 535 IPR002048 GO:0005509
Glsi10g2054 540 ProSiteProfiles Protein kinase domain profile. 92 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g2054 540 CDD EFh 398 457 IPR002048 GO:0005509
Glsi10g2054 540 SUPERFAMILY Protein kinase-like (PK-like) 91 357 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2054 Glsi-ChrGlsi10 14754284 14759334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2054 1 536 EF-hand Containing Proteins AT3G20410 76.340 0.0 850
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Glsi10g2054 Pkinase 3.7e-75 CL0016