Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2042 ATGCAGGTCTCAGGAAACGCGGATAGGGCAACAGCTATTTGTTTTGTTGACAAGGATGCAACTGGAGTTCCTGCTCTGGTTGACCTGGCTTCAATGAGGGATGCTGTTCCAGTGAACTTTGTCATAGATCATTCAGTTCAGGTTGATGTGGCAAGATCTGAGAATTCATTACAAGAAAATATGGAGCTTGAATTCCAGAGGAATAAAGAGAGATTTGGTTTCCTTAAATGGGGGTCATCTGCTTTTCACCATATGCTTGTTGTTCCTGGGTATGGAATAGTCCACCAGGTCAATCTAGAATACCTTGGAAGGGTAGTTTTCAACACTGATGGCATTCTATACCCTGATAGTGTCATTGGTACTGATTCTCACACCCCAATGATTGATGGGCTGGGAGTTGCTGGTTGGGGAGTTGGAGGAATTGAAGCAGAGGCAGCAATGCTTGGCCAGCAAGTTTGCAGAATGAAGAGGTATAAGGTTGCCAGAAAAGACACTATCATCTTGTCTGGAGCAGACTATGGAATTGGAACCTCGCGAGACTGGGTAGCAAAGGGTCCTTTGCTACTTGTGAGCTCCTATTTTGATGTCCCATTATATTTAGGTTGGGATGCAGACACACTAGGATTGACAGGTCATGAGCAGTGCACAGTAGACCTTCCATCAGAAGTTTGTGAGATAAGACCTAGTCAAGATGTTAATAGCACAATTGTCACTAGCAGATCTTTTACTTGCAAGCTTCGCATTGATACAAAGGTGGAGCTGGCTTACCTTGAGCATGGTTGTATTCTTCCTAATGTTATCCGCAACTTGATCAGTGAGCATGGTGATTTTGCATTTGGGCGCATTCCTTCGAGTGAACTTCAATGGCAGAGAGAAAGCAGAGTGCCTCATACTCATCGGCGAGGAGCCTTTGTTCTGGGGTTGTCTCCTTCCCAATTCCCTCCGTGTAGGACTCGATTGCTTTCAAATCCCATTGGGTTAACTTCTTGTCTCATCTATAAGATGCCCTTAGCTCAAGATCCTTTCTACGTTGTGAAGGAAGAGATTCAAGAATCTATTGATAAGTTGCAATCTACTTTTCATCAATGGCAAAGCACTCCTTCTGATGCTGGGGAGCGAGTGACTATTTCAAAGGAGCTGCTTGCTAGTTGCGAAAGCATTGAGTGGCAGGTAGATGAATTAGGTAAAGCAATTGCTGTGGCAGCTAGAGATCCTTCTTGGTATGGCATTGATGAAATGGAGCTTGAAAATCGGAGAAGATGGACCAGCAGTGCTCGTACCCAGGTGGGCACAGTGAAGAAAGCAGTGGAGGCTGGAAAGGGATCAAATATGGCAAGTCTTAATAGTGTAGGGATGCACCGAGAACTAATGAGGCTCCCTAATTCCCATCAAATTGATACATCCAACCAGTATCCTGCCCAAGATGATGATGATTTCATATCATCAGAATCAGATAGACAGCTGCTTCTTATAAAGCAACAGGATGAGGAGTTGGATGAGCTTAGTGCAAGTGTACAAAGAATAGGAGGTGTTGGGCTCACAATACATGAAGAACTCCTTGCACAGGAAAAGATTGTAGATGACCTGGGTGCTGAAATGGACAGTACATCAAATCGTCTAGATTTTGTCCAGAAAAAAGTAGCAATGGTCATGAAGAAGGCTAGTGCAAAGGGCCAGATCATGATGATATTGGCTTTAGTGGTCCTGTTCGTTTTCCTCTTTATTTTGGTATTCTTCACCTAG 1743 0.44 MQVSGNADRATAICFVDKDATGVPALVDLASMRDAVPVNFVIDHSVQVDVARSENSLQENMELEFQRNKERFGFLKWGSSAFHHMLVVPGYGIVHQVNLEYLGRVVFNTDGILYPDSVIGTDSHTPMIDGLGVAGWGVGGIEAEAAMLGQQVCRMKRYKVARKDTIILSGADYGIGTSRDWVAKGPLLLVSSYFDVPLYLGWDADTLGLTGHEQCTVDLPSEVCEIRPSQDVNSTIVTSRSFTCKLRIDTKVELAYLEHGCILPNVIRNLISEHGDFAFGRIPSSELQWQRESRVPHTHRRGAFVLGLSPSQFPPCRTRLLSNPIGLTSCLIYKMPLAQDPFYVVKEEIQESIDKLQSTFHQWQSTPSDAGERVTISKELLASCESIEWQVDELGKAIAVAARDPSWYGIDEMELENRRRWTSSARTQVGTVKKAVEAGKGSNMASLNSVGMHRELMRLPNSHQIDTSNQYPAQDDDDFISSESDRQLLLIKQQDEELDELSASVQRIGGVGLTIHEELLAQEKIVDDLGAEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILALVVLFVFLFILVFFT 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2042 580 Gene3D Aconitase, domain 4 196 272 IPR015928 -
Glsi10g2042 580 FunFam syntaxin-61 isoform X1 491 552 - -
Glsi10g2042 580 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 488 550 IPR000727 -
Glsi10g2042 580 CDD SNARE_Qc 491 548 - -
Glsi10g2042 580 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 155 270 IPR006249 -
Glsi10g2042 580 Gene3D Aconitase, domain 3 10 165 IPR015931 -
Glsi10g2042 580 Pfam Syntaxin 6, N-terminal 340 433 IPR015260 GO:0016020|GO:0048193
Glsi10g2042 580 Gene3D - 495 559 - -
Glsi10g2042 580 Pfam SNARE domain 525 576 IPR000727 -
Glsi10g2042 580 SUPERFAMILY Aconitase iron-sulfur domain 18 153 IPR036008 -
Glsi10g2042 580 Gene3D - 337 439 - -
Glsi10g2042 580 Pfam Aconitase family (aconitate hydratase) 18 161 IPR001030 -
Glsi10g2042 580 CDD SNARE_NTD_AtSYP61-like 339 437 - -
Glsi10g2042 580 ProSitePatterns Syntaxin / epimorphin family signature. 494 533 IPR006012 GO:0005484|GO:0006886|GO:0016020
Glsi10g2042 580 SMART tSNARE_6 483 550 IPR000727 -
Glsi10g2042 580 SUPERFAMILY LeuD/IlvD-like 155 270 - -
Glsi10g2042 580 PRINTS Aconitase family signature 113 126 IPR001030 -
Glsi10g2042 580 PRINTS Aconitase family signature 61 74 IPR001030 -
Glsi10g2042 580 PRINTS Aconitase family signature 127 142 IPR001030 -
Glsi10g2042 580 SUPERFAMILY SNARE fusion complex 487 550 - -
Glsi10g2042 580 FunFam Syntaxin 10 337 439 - -
Glsi10g2042 580 SUPERFAMILY t-snare proteins 339 436 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2042 Glsi-ChrGlsi10 14654023 14666901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2042 390 580 SNARE and Associated Proteins AT1G28490 69.634 1.16e-86 266