Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2040 ATGAACGCGGCCAATGATGAAAGCGTGCTACTTAATATAACCGGGGGAGAAGGAGCAGGAGGAGGTGGGGCTGGTGCCAGTGAGGGCGTGGTGGAGGAAGTGGCCCTGAAGAAGGGTCCTTGGACCGCGGCAGAGGATGCTATTCTTATAGATTATGTGACCAAACACGGTGAAGGGAACTGGAACGCGGTGCAGAAGAATACAGGGCTGGCTCGATGTGGCAAGAGCTGTAGGCTGAGATGGGCTAACCATTTGCGACCCAATTTGAAGAAGGGTGCCTTCTCTCCAGAGGAAGAGAAGCTCATTCTTGAGCTTCATGCCCAGTATGGCAACAAATGGGCTCGAATGGCAGCTCTGGTACGCATTTTCACAAGCACTTATCTTCATCTTGTTCTCCCTGTTTTTTTTTCATCTGTTTCTCTGTATTGTCAAATAGCGTTGGTGAAGCGGCGCCAACGCCAAGGCCTGCCTCTTTATTCCGATGACCTTGATCATCCTACAACGCCCACGAGACCCACCACCTCTTCCGCGCCCGTCACCCCTACAGGACAAACCACCTCTACTGCTACGCAATTCGATTTCCTTCATCAGCACCACCATCCTCTGTCTCCAACTCCACCCCCTCATTCTCCTCTGTCTTCACCACTCCAGCCTAAACCCACCTTTTCTGCTCTCCCCGAGTCCATCCCTTTGTCTTCCCCCTCCCCTTCCCGGCTTTCCTTCATCTTCAACCGACCTGCTCCAGTTCTCAGTAGCCCACTTGGTTTCAAGCGTTACCGCACTTCTTCCGGTTATCCCCTTCAGATCGCTTTCTCTAATCCAAGCTCTGCGGCACTTCCGATTCAGCCTGTCACGACCCAATTGGGCGGCTATTCCGGATTCGGGTTCCCGGCTCAACTCAACTCCAGTTCGTCTCAAATTTATCAAACTCCATTATTAGAGTCAAATCAAGGAGGAGTTTCATGCCCTTCGGTTTTCTCCACGAAATTGGAGCTCCCTTCAAACCAATATCCCCAGCCCATAGAGCCAGAGATGAAGTTTGACATGCAAATGAACGATCCTGCTTTGAAGACCAGTAATGGGTTGCTGGGGGATCTTCTCTTTGAAGCTCAGGCATTGGCCTCTGGCCAGACGACATCGAAGAAACGGAGTTACTTGAGTTTAAATGAAGGAAATGATATCTTTGATGGATACCAAGGATTTGATGATTTGCCTCTTAGCTCAGCTTACTGGTCTTCTTCTGCAGGAATGAAACTAAAGGAAGAAGCGCCGGACCTGAGCAAATCCATGAACGATGATTTATCTTCGCTGCTTAGTGTAGTGCCTTCCACTACACAGGTTCCGGATTGGCATAATGGCAGTGCAGCAGAAGTCTCCAATGTCCAATCTTCTGGTGTGATGCCAGATGATATTTTTGGACTTGACATGAAGCCCATAGCTTCATTGTTTCCTATCACATCCACAACAAACCATAATGACAATTCTAGCTGCTTCTCTTGGGACAATTTACCTGGACTCTGCTGA 1524 0.4941 MNAANDESVLLNITGGEGAGGGGAGASEGVVEEVALKKGPWTAAEDAILIDYVTKHGEGNWNAVQKNTGLARCGKSCRLRWANHLRPNLKKGAFSPEEEKLILELHAQYGNKWARMAALVRIFTSTYLHLVLPVFFSSVSLYCQIALVKRRQRQGLPLYSDDLDHPTTPTRPTTSSAPVTPTGQTTSTATQFDFLHQHHHPLSPTPPPHSPLSSPLQPKPTFSALPESIPLSSPSPSRLSFIFNRPAPVLSSPLGFKRYRTSSGYPLQIAFSNPSSAALPIQPVTTQLGGYSGFGFPAQLNSSSSQIYQTPLLESNQGGVSCPSVFSTKLELPSNQYPQPIEPEMKFDMQMNDPALKTSNGLLGDLLFEAQALASGQTTSKKRSYLSLNEGNDIFDGYQGFDDLPLSSAYWSSSAGMKLKEEAPDLSKSMNDDLSSLLSVVPSTTQVPDWHNGSAAEVSNVQSSGVMPDDIFGLDMKPIASLFPITSTTNHNDNSSCFSWDNLPGLC 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2040 507 CDD SANT 93 121 IPR001005 -
Glsi10g2040 507 ProSiteProfiles Myb-like domain profile. 86 117 IPR001005 -
Glsi10g2040 507 CDD SANT 40 85 IPR001005 -
Glsi10g2040 507 MobiDBLite consensus disorder prediction 201 215 - -
Glsi10g2040 507 SUPERFAMILY Homeodomain-like 39 115 IPR009057 -
Glsi10g2040 507 FunFam MYB-related transcription factor 37 90 - -
Glsi10g2040 507 Gene3D - 90 129 - -
Glsi10g2040 507 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 148 475 - -
Glsi10g2040 507 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 89 IPR017930 -
Glsi10g2040 507 MobiDBLite consensus disorder prediction 216 230 - -
Glsi10g2040 507 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 120 IPR017930 -
Glsi10g2040 507 SMART sant 37 87 IPR001005 -
Glsi10g2040 507 SMART sant 90 151 IPR001005 -
Glsi10g2040 507 Pfam Myb-like DNA-binding domain 41 100 - -
Glsi10g2040 507 MobiDBLite consensus disorder prediction 166 194 - -
Glsi10g2040 507 ProSiteProfiles Myb-like domain profile. 33 85 IPR001005 -
Glsi10g2040 507 MobiDBLite consensus disorder prediction 158 230 - -
Glsi10g2040 507 Gene3D - 37 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2040 Glsi-ChrGlsi10 14640189 14642907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2040 35 165 MYB Transcription Factor Family AT2G32460 61.069 1.61e-48 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi10g2040 Myb_DNA-bind_6 2.9e-14 CL0123