Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2015 ATGTCGTTCAGTGGGAAACGACTCCTCCTAGACGAGATGGATTTCTTCTCTGATAAAAAGAAAAAGAACTGTGATCAACATCATGATCAGATGGTGCAGTGCAGATCTTCAATGGAGCTTCATGTTGATGTAGTAAAACTTACTAGTTTAGATCTTGTTTCTAAGACTACCAGGAGCAATAGATCGACTGTGGATGATGGAGAAGCAGAAACCATGGATGAGAAAAGAAAAGAGGTGAATGCTGAGAATCAACGTTTGAGAGAGGTGGTTGATCAGGTGAACAACAACTACAATACCTTGCAGAAGCAACTTACCAAGCTGCAGAATGGGGGGCACAGTAATGGGATAGAAGGACCCACAAGTGAGAAGGGTAGGAATAAAGGAGGTATAATTCCAAGGCCATTTATGGATATGGGTCTTGTTGGGTTTAAAAATGAGTCTTTGGAAGGCAAAGTGCAAAGCAAAAGCATGGTTGACTTGATGGAGTGCAACCCAGATCATCATATCACAGTTAATTATGGTGGTAAGGATCATAGTGGAAAAGACTTAAGAGATATTGATTCATCAGAAACCATGTCAATGATCAAGAAAGCTCGTGTATCAGTTCGAGCACGATCAGAATCTTCAATGATTTCAGATGGATGCCAATGGCGAAAGTATGGGCAGAAGATGGCAAAAGGAAACCCATGCCCAAGAGCTTATTATCGTTGCACCATGGGAGCTAATTGTCCAGTACGAAAACAAGTACAGAGATGTGCTGAAGATAGAAGCATTCTGATTACTACATATGAAGGCCAACACAACCATCCACTGCCTCCCACCGCAAAGGCAATGGCATCTACCACATCTGCAGCTGCATCAATGCTTCTTTCAGGATCAATGCCAAGTGCAGATCATGGCCTAATAAGCCCTAACATACTAGAGAGTGCTGCAATTCCATGCTCACAAAACCTAGCAACCCTCTCAGCCTCAGCTCCATTTCCAACTATTACATTGGATCTCACTCAAACTACCACCAATTACTCACAGCATCAACCTCCAATCTTGGCTCAAAAGTTCATGTCGGTTCCAACCATTTTTGACCAAACTAGGGTTTCTGGCTTAGATGGGTCTCAGGTGGGAACCGAGACAGCTTCATTTGCTGACACAGTAAATGCAGCAACGGCTGCTATCACTGCAGATCCAAACTTCACAGCAGCTCTTGTTGCTGCCATAACATCTATCATAGGAATCAAGATATCTTGTTCTCGACAGTTCCTATCATTCTTCTGGTCTCCGGCAATTGATGGTCTGACACTGTACAACATGGAAACCAAGAGTAGATCTGTTACGGCGACTCTCCTCATTTGCTTGTGTTTATTGCCTACCATAATTTCTGCATCCGATGATGGGTTGGTCAGGATTGGGCTCAAAAAGAGAAAGTTGGATCAAAACAGCCGGGTTGCTGCCCAATTAGAATCCAAGAAGGGAGGGTCTTTCAGAGGCCTGCTTAAGAAATATCAACTCCATGAGAAATTAGGCTACGGAGAAGATACTGATATTGTGTTACTTAAGAATTATCTAGATGCTCAATATTTCGGTGAGATTGGCATTGGTACTCCCCCACAAAAGTTCACAGTAATATTTGACACTGGTAGTTCCAATTTGTGGGTTCCGTCATCTAAATGTTATTTCTCGGTTGCTTGCTATCTTCATTCTAAATACAACTCAAGACGTTCAAGTACCTATAAGAAGAATGGTAAACCTGCAAACATCCATTACGGAACTGGTGCTATATCTGGGTTCTTTAGTCGAGACCATGTGAAACTCGGTGATCTTGTGGTGGAGGAGCAGGAATTTATTGAGGCAACCAGGGAGCCCAGTATTACATTTCTGGTAGCCAAGTTTGATGGCATACTTGGACTTGGATTTCAAGAGATTTCTGTAGGAAGTGCAGTACCTGTCTGGTATAACATGGTCAACCAGGGTCTCTTAAAGGAACCAGTTTTCTCTTTTTGGCTTAACCGAAATGTGGATGAAGAAGAAGGGGGTGAGATTGTTTTTGGTGGAATGGACCCTAATCATTACAAGGGTGAGCACACATATGTTCCTGTGACAAAAAAAGGGTACTGGCAGTTTGAGATGGGTGATGTATTGATTAGTAATAAATCAACTGGATTTTGTACTGGTGGCTGTGCAGCAATTGCTGATTCTGGAACCTCTTTGTTGGCTGGTCCTACGACAATTATTGCTGAAGTCAATCATGCAATTGGGGCCACAGGAGTTGTGAGTCAAGAGTGTAAGACTTTAGTTTCACAGTATGGGGAAACTATAATAAAGATGCTTCTAGCAAAGGATGGACCAGAGAAAATATGCTCCCAGATTGGTTTGTGCACTTTTGATGGTGTTCAAGGTGTAAGCATGGGCATTGAGAGTGTTGTTGATGAAAGTGCCGGGAAGAGCCATGGTGGTAGGCGTGATGCTGTGTGCTCCACTTGTGAGATGGCAGTCGTATGGATGCAAAACCAGCTTAAGCAGAATCAAACCCAGGAGCGTATAATTGACTATGTCAATGAGCTATGTGAACGAATTCCTAGTCCTATGGGGGAATCAGCAGTTGACTGTAACAGTTTGGCTTCAATGCCTACTATTTCCTTTACAATTGGAGGGAAGGTATTTGACCTCACGCCTGACCAGTATGTCCTGAAAGTTGGCAAAGGAGATGTTGCACAGTGCGTCAGTGGATTTTTAGCTTTGGATGTTCCACCCCCACATGGACCTCTCTGGATCCTTGGTGATGTTTTTATGGGTACCTACCATACAGTATTCGACTATGGAAACGAGAGAATCGGATTCGCAGAAGCCGCCTAA 2850 0.4319 MSFSGKRLLLDEMDFFSDKKKKNCDQHHDQMVQCRSSMELHVDVVKLTSLDLVSKTTRSNRSTVDDGEAETMDEKRKEVNAENQRLREVVDQVNNNYNTLQKQLTKLQNGGHSNGIEGPTSEKGRNKGGIIPRPFMDMGLVGFKNESLEGKVQSKSMVDLMECNPDHHITVNYGGKDHSGKDLRDIDSSETMSMIKKARVSVRARSESSMISDGCQWRKYGQKMAKGNPCPRAYYRCTMGANCPVRKQVQRCAEDRSILITTYEGQHNHPLPPTAKAMASTTSAAASMLLSGSMPSADHGLISPNILESAAIPCSQNLATLSASAPFPTITLDLTQTTTNYSQHQPPILAQKFMSVPTIFDQTRVSGLDGSQVGTETASFADTVNAATAAITADPNFTAALVAAITSIIGIKISCSRQFLSFFWSPAIDGLTLYNMETKSRSVTATLLICLCLLPTIISASDDGLVRIGLKKRKLDQNSRVAAQLESKKGGSFRGLLKKYQLHEKLGYGEDTDIVLLKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSVACYLHSKYNSRRSSTYKKNGKPANIHYGTGAISGFFSRDHVKLGDLVVEEQEFIEATREPSITFLVAKFDGILGLGFQEISVGSAVPVWYNMVNQGLLKEPVFSFWLNRNVDEEEGGEIVFGGMDPNHYKGEHTYVPVTKKGYWQFEMGDVLISNKSTGFCTGGCAAIADSGTSLLAGPTTIIAEVNHAIGATGVVSQECKTLVSQYGETIIKMLLAKDGPEKICSQIGLCTFDGVQGVSMGIESVVDESAGKSHGGRRDAVCSTCEMAVVWMQNQLKQNQTQERIIDYVNELCERIPSPMGESAVDCNSLASMPTISFTIGGKVFDLTPDQYVLKVGKGDVAQCVSGFLALDVPPPHGPLWILGDVFMGTYHTVFDYGNERIGFAEAA 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2015 949 SUPERFAMILY Acid proteases 447 948 IPR021109 -
Glsi10g2015 949 SUPERFAMILY WRKY DNA-binding domain 204 272 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi10g2015 949 Pfam WRKY DNA -binding domain 213 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi10g2015 949 Gene3D WRKY domain 196 273 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi10g2015 949 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 727 738 IPR001969 GO:0004190|GO:0006508
Glsi10g2015 949 SUPERFAMILY Saposin 756 858 IPR011001 -
Glsi10g2015 949 ProSiteProfiles WRKY domain profile. 206 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi10g2015 949 FunFam Vacuolar aspartic proteinase 822 948 - -
Glsi10g2015 949 Gene3D Acid Proteases 466 683 IPR021109 -
Glsi10g2015 949 FunFam Lysosomal aspartic protease 511 753 - -
Glsi10g2015 949 SMART sapb_4 719 791 IPR008139 -
Glsi10g2015 949 SMART sapb_4 821 905 IPR008139 -
Glsi10g2015 949 Pfam Eukaryotic aspartyl protease 524 948 IPR033121 -
Glsi10g2015 949 PRINTS Pepsin (A1) aspartic protease family signature 677 690 IPR001461 GO:0004190|GO:0006508
Glsi10g2015 949 PRINTS Pepsin (A1) aspartic protease family signature 922 937 IPR001461 GO:0004190|GO:0006508
Glsi10g2015 949 PRINTS Pepsin (A1) aspartic protease family signature 727 738 IPR001461 GO:0004190|GO:0006508
Glsi10g2015 949 PRINTS Pepsin (A1) aspartic protease family signature 531 551 IPR001461 GO:0004190|GO:0006508
Glsi10g2015 949 ProSiteProfiles Saposin B type domain profile. 819 860 IPR008139 -
Glsi10g2015 949 ProSiteProfiles Peptidase family A1 domain profile. 525 946 IPR033121 -
Glsi10g2015 949 FunFam probable WRKY transcription factor 31 196 273 - -
Glsi10g2015 949 CDD phytepsin 515 947 IPR033869 GO:0004190
Glsi10g2015 949 Gene3D - 755 858 - -
Glsi10g2015 949 Gene3D Acid Proteases 684 949 IPR021109 -
Glsi10g2015 949 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 454 947 IPR001461 GO:0004190|GO:0006508
Glsi10g2015 949 FunFam Aspartic proteinase A1 755 858 - -
Glsi10g2015 949 Pfam Saposin-like type B, region 2 758 791 IPR008138 -
Glsi10g2015 949 Coils Coil 69 110 - -
Glsi10g2015 949 Pfam Saposin-like type B, region 1 822 858 IPR007856 GO:0006629
Glsi10g2015 949 ProSiteProfiles Saposin B type domain profile. 755 795 IPR008139 -
Glsi10g2015 949 SMART WRKY_cls 211 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi10g2015 949 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 540 551 IPR001969 GO:0004190|GO:0006508
Glsi10g2015 949 MobiDBLite consensus disorder prediction 108 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2015 Glsi-ChrGlsi10 14362229 14373003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2015 12 409 WRKY Transcription Factor Family AT1G62300 43.167 2.43e-89 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Glsi10g2015 Asp 1.4e-137 CL0129