LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi10g2003	ATGGAGGCCGCTATCAACCCCGGTGAGAATAATTACGGTTCGGAGCTCCGGCGTCCCGACGATGGGGCTTCCAATGATCCGAATCAACTCGGGTCACGGCTCAATTCGGATGCCAGGGCAAGTGCCTTTGGTTCTGGAGGCGCGAGGTACAAGCTGATGTCGCCGGCGAAGCTTCCGATCTCGAGGTCGCCGTATATTACGATACCCCCAGGGCTCAGCCCGACGGCGTTTCTGGAATCGCCCGTGCTTCTGTCCAACATGAAGGTGGAGCCTTCGCCTACTACAGGGTCCCTCGCTAAGCCTCAAACACTACATGGTTCTGTTGCTTCTGCCTCGTTTCCTGTAGCCACTGTATGCTTCAGTACTAATACCGTTGATGACAGAAAATCTGGCTTCTTTGACTTTAAACCACACAATAGATCAGATATGGTTCCTGCAGATTTTAACAACCATGTAAGTAAACAATCCATGCAAATAGATGGTCCAGGCCAAGCTCAATCCTATGCCTCATCAACATTAGTTAAAACTGAGATAGCGATGCCTTCAAATGAATTAAGTCTATCATCACCTGTTCAGATGGTTAGTTCAGGGGCCAGTGCCCCTGTTGAAGTTGAGCTAGACGAATTTAACCACAGAGGCAATGCAGCCACTGGGCTTCAAGCATCACAAGTTGAGGGTAGAGGCAGTGGCCTTTCAGTTGCAGCTGACAGAGCATCTGATGATGGATACAATTGGAGAAAATATGGACAGAAACATGTTAAAGGAAGTGAATTTCCTCGCAGCTATTACAAATGCACACATCCTAATTGCGAAGTAAAAAAACTATTTGAACGCTCTCATGATGGGCAAATCACAGAGATAATTTACAAGGGAAGACATGATCATCCTAAACCTCAACCAAGCCGGCGATACTCTTCTGGTACTATAATGTCTATGCAAGAAGAGAGATCTGATAAGGCATTGTCATCCAGCCAAGATGCATCCAATATGTATGTTCAGTTGTCTCACACTGCTGAGCCCAACAGTACTCCAGAGCTATCTCCTGTACCAGCAAATGATGATAGTCCTGAGGGTGTGGGGTTAGTGTCAAATAGGGTTAATGATGAGGTTGATGATGATGATCCCTTTTTGAAGCGAAGGAAAATGGACATTGGAAATGTTGACATCACTCCTGTAGTTAAGCCTATCCGGGAACCACGAGTTGTTGTACAAACACTTAGTGAGGTTGATATATTAGATGATGGTTATCGCTGGCGTAAGTATGGGCAGAAGGTGGTGAGGGGCAATCCTAACCCTAGGAGTTATTACAAATGCACAAATGCTGGTTGCCCTGTTAGAAAACACGTGGAGAGGGCATCTCATGATCCCAAAGCAGTAATAACCACATATGAGGGTAAACACAATCACGATGTACCTACTGCAAGGAGTAGTAGCCATGACACGGCAGGACCAGCAGCTGCTGGTGGACAGACAAGAATTAGATCAGAAGAAAGTGATACTATTAGCCTTGACCTTGGGATGGGTATTAGCTCAGCTGCTGAAAATATATCGAACAGACAAGGGCAAATGCTGCTCTCTGAATTTGGGAACAGTCAAACCCACTCCAGCAATTCCAGTTTCAAGTTTGTTCATACTACCCCAGCTCCGGCATACTTTGGTGTTCTTAATAATGGCTCAGGCCCATATGGTTCTAGAGAGAATCTTAGTGATGGTCCATCTTTAAACCATTCCTCTTGTCCGTGCCCGCCGAATATGGGAAGAGTATTAACGGGTCCATGA	1779	0.4615	MEAAINPGENNYGSELRRPDDGASNDPNQLGSRLNSDARASAFGSGGARYKLMSPAKLPISRSPYITIPPGLSPTAFLESPVLLSNMKVEPSPTTGSLAKPQTLHGSVASASFPVATVCFSTNTVDDRKSGFFDFKPHNRSDMVPADFNNHVSKQSMQIDGPGQAQSYASSTLVKTEIAMPSNELSLSSPVQMVSSGASAPVEVELDEFNHRGNAATGLQASQVEGRGSGLSVAADRASDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGRHDHPKPQPSRRYSSGTIMSMQEERSDKALSSSQDASNMYVQLSHTAEPNSTPELSPVPANDDSPEGVGLVSNRVNDEVDDDDPFLKRRKMDIGNVDITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARSSSHDTAGPAAAGGQTRIRSEESDTISLDLGMGISSAAENISNRQGQMLLSEFGNSQTHSSNSSFKFVHTTPAPAYFGVLNNGSGPYGSRENLSDGPSLNHSSCPCPPNMGRVLTGP	592

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi10g2003	592	ProSiteProfiles	WRKY domain profile.	407	472	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi10g2003	592	SMART	WRKY_cls	412	471	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi10g2003	592	SMART	WRKY_cls	239	297	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi10g2003	592	MobiDBLite	consensus disorder prediction	337	362	-	-
	Glsi10g2003	592	Gene3D	WRKY domain	397	473	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi10g2003	592	Gene3D	WRKY domain	232	299	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi10g2003	592	MobiDBLite	consensus disorder prediction	25	39	-	-
	Glsi10g2003	592	SUPERFAMILY	WRKY DNA-binding domain	238	298	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi10g2003	592	FunFam	WRKY transcription factor 33	399	465	-	-
	Glsi10g2003	592	ProSiteProfiles	WRKY domain profile.	234	298	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi10g2003	592	MobiDBLite	consensus disorder prediction	1	39	-	-
	Glsi10g2003	592	FunFam	WRKY transcription factor	229	299	-	-
	Glsi10g2003	592	Pfam	WRKY DNA -binding domain	413	469	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi10g2003	592	Pfam	WRKY DNA -binding domain	240	296	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi10g2003	592	MobiDBLite	consensus disorder prediction	563	580	-	-
	Glsi10g2003	592	MobiDBLite	consensus disorder prediction	468	496	-	-
	Glsi10g2003	592	MobiDBLite	consensus disorder prediction	563	592	-	-
	Glsi10g2003	592	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	79	510	IPR044810	GO:0003700
	Glsi10g2003	592	SUPERFAMILY	WRKY DNA-binding domain	404	472	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi10g2003	Glsi-ChrGlsi10	14251542	14258520	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi10g2003	53	592	WRKY Transcription Factor Family	AT4G26640	57.013	0.0	551

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Glsi10g2003		WRKY	1.5e-25	CL0274