Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2000 ATGCAGAGCTGTAGAGATGTCACTCTGTTTCTAAGGAGGCTGGTTTTCCTTGCTGTCCTTCCTTTCTTTATCACTGTCTGTGCAGGAGGTGAGTTATCTGAATCTGAGTCTTTCTTCAGTTTCATTAGAGCCATTGATCCTCAAAATGTACTTAACATTAGCAAAATGGGTTCAGCACCACATCCCTGCATGCTTAAGTTGAAAGGTATAAGATGCAGCTCAAATACTACCGATATTATAGAAATAAAGCTTCAAAACTTGAACCTTAGTGGCACAATTGATGCCGATTCCCTATGTAGGCTACAAAAGCTGAGAATAGTTAACTTAGCTAAGAATTACATCGGAGGAAATATTCCTAATTCAATTTTGCACTGTACAAGGTTGATGTATTTAAATCTAAGCAGCAATCACTTGAGTGGGAGATTACCTAAAGCTCTAACAAAATTAAGATATCTTAGAAACTTCGACATCTCTAACAATAACTTTTCCGGCATTATCCCAAGTCAACAAGAATTTAGGCATCTCTTTGCTTATTCTAAGATTTCAAGAATATCAGAAGGAAATAGTACCAGAGAGTGGTTGAAGGTAGAGGATACAATACAAGCATCATCAGTCCCTCCTAGCAACAGCCAATCTGGCACTTGCAAAAAACCATGGTATAAGGATTTCAGAACTTTGATACCGCTAGTTTTGGGTCTTGGATTGCTGTTGATTTTGATGTACTTTGTGGGCAAAAAAGCAGCTCAGTTAGCTGCAATGAGCAAGGGGTTGGAAACCCATAGGGAGCCTTCGATCAAAAAGACAATAACTGAGGTTAAAGAAGAGGGGAAGCTAAAGAAAAGAGATTCAGAGCTTGTATTCTTTGTTGAAGAGCATGAAAGGTTCACAATGGAGGACCTACTTCAAGCCACGGCTGACTTACGAAATGAAAGCTTTTGCAGCAGCCTGTACAAGATAAGTAACTTGGAACATCCAAATATTCTTCCCCTTGTCGGTTATCGTTCTACCAATGAAGAAAAACTTCTCATTTATAAATATCAAAGCAATGGGAGTCTGCTATCTCTTCTAAAGGACTCTATTGAAGGTAAAAAAGATTTCCCATGGAAACTGCGACTGTCAATAGCATGTGGCATTTCAAGGGGTTTGGGCTTCATATTTCAGAAGTTGGATGGCAGGGAGATTATTCCACATGGAAATCTTAAGCTATCAAATATCCTTCTTAATAACAACAATGAACCATTAATAAGTGAGCATGGATTATCAAAATTCTTAGACCCCAGTAGAGCTTTCCTCTTTTCTTCTCATGGATATACAGCTCCAGAAAAGAGTTTGACAGAGAAGGGTGATGTTTATAGCTTTGGAGTGATTCTCCTTGAATTATTAACAGGAAAAAGCGTAGAAATCAATGGCATAGACCTTCCTAGATGGGTGAGGTCCATGGTAAGAGAGGAATGGACAGGAGAGGTCTTCGACAAAAAAGTTAGGGATGCTGAATATCAGTGGGCATTTCCAGTGCTGAATATAGCCATCCTGTGTATATCACGACTCCCTGAAAATCGGCCTACCATGGAAGAAATTATGGAGAAGCTCAATGAAGTAATGCATGAACATGAACAACTGGAAGATTTTAGTTCAACATATGGTAATCATGGATGCAACAATGAAGATTGCTGTTCACTTCACAAAATCATACCTGAAACATGGGATTCTCCAGGATCAAATTACTGA 1728 0.3889 MQSCRDVTLFLRRLVFLAVLPFFITVCAGGELSESESFFSFIRAIDPQNVLNISKMGSAPHPCMLKLKGIRCSSNTTDIIEIKLQNLNLSGTIDADSLCRLQKLRIVNLAKNYIGGNIPNSILHCTRLMYLNLSSNHLSGRLPKALTKLRYLRNFDISNNNFSGIIPSQQEFRHLFAYSKISRISEGNSTREWLKVEDTIQASSVPPSNSQSGTCKKPWYKDFRTLIPLVLGLGLLLILMYFVGKKAAQLAAMSKGLETHREPSIKKTITEVKEEGKLKKRDSELVFFVEEHERFTMEDLLQATADLRNESFCSSLYKISNLEHPNILPLVGYRSTNEEKLLIYKYQSNGSLLSLLKDSIEGKKDFPWKLRLSIACGISRGLGFIFQKLDGREIIPHGNLKLSNILLNNNNEPLISEHGLSKFLDPSRAFLFSSHGYTAPEKSLTEKGDVYSFGVILLELLTGKSVEINGIDLPRWVRSMVREEWTGEVFDKKVRDAEYQWAFPVLNIAILCISRLPENRPTMEEIMEKLNEVMHEHEQLEDFSSTYGNHGCNNEDCCSLHKIIPETWDSPGSNY 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2000 575 Gene3D Phosphorylase Kinase; domain 1 289 347 - -
Glsi10g2000 575 Gene3D Transferase(Phosphotransferase) domain 1 348 552 - -
Glsi10g2000 575 Coils Coil 523 543 - -
Glsi10g2000 575 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 95 177 - -
Glsi10g2000 575 Pfam Leucine rich repeat 103 162 IPR001611 GO:0005515
Glsi10g2000 575 Gene3D Ribonuclease Inhibitor 33 199 IPR032675 -
Glsi10g2000 575 ProSiteProfiles Protein kinase domain profile. 237 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g2000 575 PANTHER OS05G0588300 PROTEIN 222 535 - -
Glsi10g2000 575 Pfam Protein tyrosine and serine/threonine kinase 305 530 IPR001245 GO:0004672|GO:0006468
Glsi10g2000 575 SUPERFAMILY L domain-like 61 169 - -
Glsi10g2000 575 SUPERFAMILY Protein kinase-like (PK-like) 316 530 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2000 Glsi-ChrGlsi10 14220571 14222638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2000 52 546 Receptor kinase-like Gene Family AT2G36570 27.448 1.34e-57 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi10g2000 PK_Tyr_Ser-Thr 2.4e-21 CL0016