Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1999 ATGGTTTCAGATCGACTTCGACAAAACCCACTACAACTGATGGAATCAGATCTTGGTAAGCTCTTCATTGGAGGAATTTCTTGGGATACTGATGAAGAACGTCTTAAAGAATATTTTGGGAAATATGGAGAGGTGATAGAGGCCGTGATCATGAGAGATCGCACAACAGGTCGTGCTCGTGGTTTTGGTTTTATTGTCTTTGCTGATCCTGCTGTTGCTGAACGAGTCATTATGGATAAGCATATAATTGATGGCCGCACAGTTGAGGCAAAAAAAGCTGTTCCCAGGGAGGATCAGCACGCTATAAATAGAAATTCTGGTAGTGTCCATGGCTCTCCTGGTCCTGGGCGGACAAAAAAGATTTTTGTTGGAGGTTTACCATCAACTATTACTGAAAGTGATTTTAAGAAGTATTTTGATCAGTTTGGTACAATTACTGATGTTGTAGTAATGTATGATCACAACACCCAGAGGCCAAGAGGCTTTGGCTTCATCACTTATGATTCAGAAGAAGCTGTGGACAGAGTTCTTTATAAAACATTTCATGAACTCAATGGAAAGATGGTTGAGGTCAAGAGGGCAGTTCCAAAAGAGCTTTCCCCCGGGCCCAGCCGGACACCATTCATAGGATACAACTATGGTTTGAATAGGGCCAGTAGCTACCTAAACAGTTATGCTCAGGGTTATAATATGAGTCCAATTGGAGGCTATAGAGTGAGGATGGATGGTAGATTTAGTCCACTTAGCGGTGGTAGAAGTGGGGTTTCCCCATTTGCCACCAGTGGTTATGGAATGGGAGTGAATGTGGATGCAGGATTGAACCCAAGCTATGATGGGACTTCCAGTTATGGGAGCAGTCTAGGATATGGTCGGATTTTTAATCCTTTCTACAGTGGCAACTCAAGCAGATATACCACTCCTATAGGCTACAGTGGAGGTAATGGAAGAAATGATTCTGTTATGAACTCACCTTCTCGGAATGTCTGGGGAAATGGGGGCCTAAATCATACCAATAATCCAGTCAACCCTGGTGCTTACTTGGGATCTGGAGGTGGAGCTTTTGGTGTTTCAATTGGAAATAATGGTACAAATTGGGGTCAGTCCAATTCAACCCTTGGGGGAGGGGTTGGTTCTGGCTATGCCTCTGGGAGTAATGTTTATGAAGGTGGAGATAGCAGCTTTGGGTTAGGAGGGGGAGGTTATGGAAGACATAGCACTACTGGTGTAACTCCATCCTCTTCATTTACTGCATCAGCTGGCGGTTATGAAGGATCCTATGGGGACTTACACCGCAGTGGTTCAGTTTACAATGATTCAGCTTGGCGAACTGCTGCTTCCGACCTAGATGAGTCTGGCTCATTTGGTTATGGATTTGGTGGTCTAGCTTCAGAGGACCCAGTAAAGACTTCTGAAGGTTACATTGAAAATTACAATGTTACAAGTAGACAGCCTAATAGAGGAATCGCTACGTAG 1473 0.4406 MVSDRLRQNPLQLMESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFIVFADPAVAERVIMDKHIIDGRTVEAKKAVPREDQHAINRNSGSVHGSPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPSRTPFIGYNYGLNRASSYLNSYAQGYNMSPIGGYRVRMDGRFSPLSGGRSGVSPFATSGYGMGVNVDAGLNPSYDGTSSYGSSLGYGRIFNPFYSGNSSRYTTPIGYSGGNGRNDSVMNSPSRNVWGNGGLNHTNNPVNPGAYLGSGGGAFGVSIGNNGTNWGQSNSTLGGGVGSGYASGSNVYEGGDSSFGLGGGGYGRHSTTGVTPSSSFTASAGGYEGSYGDLHRSGSVYNDSAWRTAASDLDESGSFGYGFGGLASEDPVKTSEGYIENYNVTSRQPNRGIAT 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1999 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 196 IPR000504 GO:0003723
Glsi10g1999 490 FunFam Heterogeneous nuclear ribonucleoprotein 1 18 100 - -
Glsi10g1999 490 SMART rrm1_1 120 192 IPR000504 GO:0003723
Glsi10g1999 490 SMART rrm1_1 20 91 IPR000504 GO:0003723
Glsi10g1999 490 CDD RRM1_hnRNPA_hnRNPD_like 21 91 - -
Glsi10g1999 490 SUPERFAMILY RNA-binding domain, RBD 118 206 IPR035979 GO:0003676
Glsi10g1999 490 CDD RRM2_Hrp1p 120 197 - -
Glsi10g1999 490 Gene3D - 118 198 IPR012677 -
Glsi10g1999 490 SUPERFAMILY RNA-binding domain, RBD 11 117 IPR035979 GO:0003676
Glsi10g1999 490 FunFam Heterogeneous nuclear ribonucleoprotein 1 116 203 - -
Glsi10g1999 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 179 IPR000504 GO:0003723
Glsi10g1999 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 88 IPR000504 GO:0003723
Glsi10g1999 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 95 IPR000504 GO:0003723
Glsi10g1999 490 Gene3D - 19 101 IPR012677 -
Glsi10g1999 490 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 14 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1999 Glsi-ChrGlsi10 14210451 14213032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1999 18 193 Eukaryotic Initiation Factors Gene Family AT2G23350 23.034 4.39e-09 57.0