Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1984 ATGATATCTTTTTACCCTGCAAGGTCAACAGAAGTGCTAATAAACACTGGGTCTTGTTCATACATATTATTTGTGAAGTTTAAGGAAAGACGAAACAAAACCCTTCTTCTCCCTTCAGAAGAACCGAACCAAAGCCATAGCCAGATTCTGCAGGGGCTGCTTTTAGTTGAGGTGGCTCGCGCTCTGATTTTTGAGAATTTGAGGGTGAAGAGGAATATGGCATCTTCGGATGATGAGGCCGAGGTTCATCCACAATCTGTGTCGAATTACCATTTTGTAGATGACAAGGATGTGCCTGTTTCATTTTCTTTATTGCCAATTCAATGGAGTGAATCTGAGAATCCAGATGGTAGCAAAGAGCAGGTATTCCTACATGGGGTTGCAGATAATGGGCTGCAGAAAATATTTATGCAAGTCATAGCATGGAAGTTTGATAATTCCGGTGTGAAACCTGAGATATCAGTGCTATCAAAGGATAGAAGATGGATCAAACTTCAGAAACCGAGGAAGAGCTTTGAGGATACCATAAGGACAATTTTAATTACTGTTCACTTCATACATTATGTGGAGAAAAACCCTGAAACATCTGCTAAATCTGTGTGGGATTATTTGTCTAAGGAATTGAGGTCGTATGAGGTTAGGCCTTCACAAAATGATTTATTGAATCACATGCCTTTAATTGGCGAAGCTGCTAAACGGAGTTCCATCTTATCTGCGTCCAAGCTTTATCTCATGCTTCTTGAGAAGCCGGGGGATACAAAAGTGTCTGACAAGGAAGCTAATAATTTAGCAAGGCCTGCATTTATAGTTGATGATGATATTGATGATGGTACAATTGATGAAGCTGCTGAAGAGTCAGATGAAGATGAAGAGTTGTTTGATTATGTTTGTGCAATTTGTGACAATGGTGGTAAACTGTTGTGTTGTGATGGTAAGTGCATGAGGTCATTCCATGCTACAGAGGAGGATGGTGCAGAATCTATTTGTGACTCTCTTGGTTTTACTCCAAAGGAAGTTGATGAGATCCAGAACTTCTATTGTAAAAATTGTGAGCATAATCAGCACCAGTGCTTTGTTTGTGGCAAGCTAGGCTCCTCTGATAAATTCTCGGGTGCTGAGGTCTTTCGCTGTGTTTCTGCAACTTGTGGTCGCTTTTACCATCCACGTTGTGTTGCAAAGTTACTTCACCGGGAAGATGAGCATGCTGCAAAGGAACATGAGAAAAATATTGCTGATGGGGAAGCTTTTACTTGTCCTATTCATTATTGCTGCGTCTGTAAACAAACAGAAAATAAGAAGGAACATGAATTGCAATTTGCTGTCTGTAGGCGTTGTCCTAAGTCATATCACCGCAAATGTTTGCCAAGGAAGATTGCTTTTGAAGGCAGCGAGGAAGATGTTATAGCAAGGGCTTGGGAAGGTCTTTTACCAAATAACCGCATACTTATATATTGCTTAAAGCATGAGATAGATGATGAACTTGGAACTCCCATTAGAGATCATATCAAATTTCCCAAGGTTAAACGTACTGTTCGAGAAATTAATTCTTCCTTAGAGGAAGAGACAAAGGCTTCAACAGAACAGAGAGTTATATCAAACAAAAACAATGTTGACCTGGATTATTCCTTTGGCAGACGAACTACTCCTAAATTATCTAAACTGACTAAAAAATTGTCTTCTGGGAAAGTTGGTATTAGGAAAAAGTCTGAGAAGGTTATTTCTGAATCAAATATTTTAAGGAAACGGAAAGCAATTGATGCATCAGGAAGGTGCTTGAATGCAAAAAAGAGGTTTATCTCAAAGGAAATTGGAAAGCTTGACAGTGAGGAGAGCCGGGCCTCATTGGGTGAAAAACTATATACTATCATGACTAAGGGTTCTGAGCAAATTGAGCCTGGGAAGCATGCTGATAATGTATCTAATAAGACCCTGCCTGTCAAATCTACTAAAAACGAGCTGAGTAGTACATTTCCTTCGTTGGATGCTGACTCAGAGAGGAGTCTGTTGGCTTTGCTTAAAGAAGCTACATCATCCATTACTTTGGAGAATGTCTTAGAAAAGCACAAACTTGCTTCTACTCATACTCAATCCTTACGGAATGTTGTGGAGAAGACCATTACTTTGGGGAAGTTGGAAGGCTCAGTTGATGCGGTTCGAACTGCTCTAAGGAAGCTAGATGAAGGGCGAAGCATTGAGGACTCACAAGCTGTTTGTGACCCTGATGTTCTGAACCAAATATTCAAATGGAAGGACAAGCTGAAAGTGTATCTCGCACCTGTTCTGTATGGTAATCGCTACACATCCTATGGCCGCCACTTTACACAAGTTGAAAAACTGGAAGGGATTGTTGATAAACTCCACTGGTATGTTCAGAATGGTGATATGATAGTAGACTTCTGTTGTGGCGCTAACGATTTTAGCATCCTTATGAAGAAAAAGCTTGAAGAAACTGGGAAGAAATGCTCCTTCAAAAACTTTGATTTACTTCCAACAAAGTTTTCCATGCTTTCCAAGTTGTATGAACCCAGTTCAATGACAATGACTTCTGTGTTATTTTCTGCTACCCTGTTCTATTAG 2577 0.4001 MISFYPARSTEVLINTGSCSYILFVKFKERRNKTLLLPSEEPNQSHSQILQGLLLVEVARALIFENLRVKRNMASSDDEAEVHPQSVSNYHFVDDKDVPVSFSLLPIQWSESENPDGSKEQVFLHGVADNGLQKIFMQVIAWKFDNSGVKPEISVLSKDRRWIKLQKPRKSFEDTIRTILITVHFIHYVEKNPETSAKSVWDYLSKELRSYEVRPSQNDLLNHMPLIGEAAKRSSILSASKLYLMLLEKPGDTKVSDKEANNLARPAFIVDDDIDDGTIDEAAEESDEDEELFDYVCAICDNGGKLLCCDGKCMRSFHATEEDGAESICDSLGFTPKEVDEIQNFYCKNCEHNQHQCFVCGKLGSSDKFSGAEVFRCVSATCGRFYHPRCVAKLLHREDEHAAKEHEKNIADGEAFTCPIHYCCVCKQTENKKEHELQFAVCRRCPKSYHRKCLPRKIAFEGSEEDVIARAWEGLLPNNRILIYCLKHEIDDELGTPIRDHIKFPKVKRTVREINSSLEEETKASTEQRVISNKNNVDLDYSFGRRTTPKLSKLTKKLSSGKVGIRKKSEKVISESNILRKRKAIDASGRCLNAKKRFISKEIGKLDSEESRASLGEKLYTIMTKGSEQIEPGKHADNVSNKTLPVKSTKNELSSTFPSLDADSERSLLALLKEATSSITLENVLEKHKLASTHTQSLRNVVEKTITLGKLEGSVDAVRTALRKLDEGRSIEDSQAVCDPDVLNQIFKWKDKLKVYLAPVLYGNRYTSYGRHFTQVEKLEGIVDKLHWYVQNGDMIVDFCCGANDFSILMKKKLEETGKKCSFKNFDLLPTKFSMLSKLYEPSSMTMTSVLFSATLFY 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1984 858 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 352 IPR013083 -
Glsi10g1984 858 CDD PHD2_NSD 356 421 - -
Glsi10g1984 858 CDD PHD3_NSD 422 455 - -
Glsi10g1984 858 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 77 832 - -
Glsi10g1984 858 Pfam Cytosine specific DNA methyltransferase replication foci domain 86 206 IPR022702 -
Glsi10g1984 858 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 353 444 IPR013083 -
Glsi10g1984 858 SMART PHD_3 296 351 IPR001965 -
Glsi10g1984 858 SMART PHD_3 423 489 IPR001965 -
Glsi10g1984 858 SMART PHD_3 356 422 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1984 Glsi-ChrGlsi10 14072505 14087223 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1984 285 397 PHD Transcription Factor Family AT3G14980 28.319 1.42e-06 50.4