Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1976 ATGGATGCGACGCCGGAATCTGAGGTGAAGGATACGGTGGCGGAGTCGCAATCGGAGAGCTTGGCGGAGAAGAGGCCGATTGAGAATGGCGGAGGTGAGGATTTGGGTGACCCGTGTAGCAAGAGGCCTAAGGTTGAAGCTGCGTCGAGCGGGGACTTGAAGAGAGTGGCGGAGATTGTGTTGGTTTTGTCGACAATGGCCCCAATGCGAGGTTGTAGGAATCCGACTGAAGTTGAGATTGAGCTGATGAAGGAGGCTCGCACGAAGTTAGTGGAGTTGTGCCAAGGAATTGCTCCGAAGGATATTGTGGCAAGGGAAGCTATAGGGACTGTGATTGAGGATCTCGGGTTGAATGGGAAGATTAAAGACCAGAGATTAGGATTTCGAACTCCAAAGATGTCTATAGCCGAGAGGTTTTCGCACACCAAGTGGAAGATGGAAGAATCAAAAAAGTTTTCTGCTCATTCTGCAACATATGCATCCCAGCCAATGCAACCAAGCATTGGTGGAACAGTTGAAAACCGTGCACAATCACATACTATTCGAGTGCTTCCATCAGATAAATCAAGCCACATGGCAATCTCTTCTTCTACATCTTTAGCTCATGCTTCTGCAGCATCTTCTGCAGCTTTGCAATATCAATCAACTGGCAATGAAGTAAGAGCACCTCTGGTTTCTGGTGGAATGACTAGTAGTCACTTGGGAAGAAATCCATCTTCCTCAGCATTGCCTAAAGTTGAGCAAACACAGTTCAAAGTTGATGGAGCTTCAAATTCATCTTCTTATGTGCTGCAAATGCAAGCAAATTCTGCAGCAAACCTACCTTTGGTGAATGCTCCAAGTTGGTCAATGCAGACTCAATCTGTCTCATTAGCTAGAGCTGCACCAGAAAACAAAATGCCTGGTCATACTTCTGTCAAGGTTGAGGCTACAGGTGGCATGACTGTATCTAGTGCAGCTCCACAAATTGCAAGGGATCAGAGCTTTAGACCATTTATTACTCAAATAACACCTGGAAATTTACCTAGTATGCACCAGCCGTCGCAAGGCATGAACATTGTTCAGCCTCCTTCAGTAGCTAATAATCACACTGAAATAGCAAAGATTATCCAGAAATTGTTACATCCAAAGCTTCCTGAGCATCCCATGTGGACTCCTCCATCAAGGGACTATATGAATAAGGCTTTGACTTGCCAGATGTGTGAGCTTACTGTCAATGAGGTGGATACTGTGCTTCTGTGTGATGCTTGTGAAAAAGGATTTCACTTGAAGTGCCTGCAGTCGTCAGTCTTAAGAGGAATTCCTAGAGGTGAGTGGCACTGTATGAAGTGCTTGACACTAAGTGGTGGAAAGCCTTTGCCTCCAAAGTATGGTCGTGTTATGAGATCCTCAAACACTCCACCGAAAATGACCTCAAATATGGTTGGAAATCATCCATCTTCAGAGAAAGCAGGAGTATTAGATTCAAGGGTCAGCACACAGAAGTTAACAACAAACCGGAGCACTGCTCCAATTGGTGCTACAGGCAATAACAATGTTGAATCACAATCTGACACGAAGACTGTAGATATAAAAGAAATACAAGGGAACACCATTTCATCCAGCATTAAGCATATGGATGAGCAGCTTGACCCAAACAACTCAATGAGGTCTTCTAGTGCAGCTTCTGGTGCATCTATTGGCTCGCTAGGTGAAAGATCTGCTCAACAAATAACAAGTTCTGAGGTATCTACTTGTAAAGAGAAAACCCTTGCTTCAGAACCAGAGATTCTTTCTAAATTATCTCGGTCAGTTGAATGTGACAATTTACAATTGTCACAAACTTTACAAGTTGAGCAGACAGTGTTGCAAGACAATGCTGAAGTATCATCAGATAAATGCCTTGGCAGTAGTTTGACAAATAATTACCAAAAGGAATCTCATGTAGGTGAAATTTTGACATATGATATCAAGCGTGACGAACAAGATGTTTCACTAGCAAATTCTGATGGCAGTTTGGGAATTAACAATGAAGATAGACAGTACTATGCATTATATTCAGATGGATCATATTCTGTACAATGGATTGGTGATATTATACAGCTTGTGAATGAGAAAAAGTTTTACCAAACTTGCTGTGTTGATGGAGTAACATATAGGCTGCAGGATCATGTTCTTTTCCCCTCCAACCATGGCAAATTAACACCTTCTAAACTTCAGTCTATGTGGGAAGATAGCCAAACTGGTTTGAAGTGGGTTAGTGTGACAAAGTGCTACTTTCCTGGTGATCTGCCAGGGAATATTTGCCATCCATGTATATCTGAAGTCAGTGAGGTTTATGAATCTAATAGTCGTAGAAATGAGAAGGCTGGCTCTATTCAAGGACCATGTGAAGTACTCCCATATGATAAATTTAAACAAGAAACTGACAGACGAAGTCAATTAGGGCTTGAGGCAAGTGCTAGACTATGCCCAATTTTCCTTTGCAGGTGGTTTTATGATGAAGTCAAAAAGTTATTTCAACCTGTTATAAGTTAA 2517 0.4251 MDATPESEVKDTVAESQSESLAEKRPIENGGGEDLGDPCSKRPKVEAASSGDLKRVAEIVLVLSTMAPMRGCRNPTEVEIELMKEARTKLVELCQGIAPKDIVAREAIGTVIEDLGLNGKIKDQRLGFRTPKMSIAERFSHTKWKMEESKKFSAHSATYASQPMQPSIGGTVENRAQSHTIRVLPSDKSSHMAISSSTSLAHASAASSAALQYQSTGNEVRAPLVSGGMTSSHLGRNPSSSALPKVEQTQFKVDGASNSSSYVLQMQANSAANLPLVNAPSWSMQTQSVSLARAAPENKMPGHTSVKVEATGGMTVSSAAPQIARDQSFRPFITQITPGNLPSMHQPSQGMNIVQPPSVANNHTEIAKIIQKLLHPKLPEHPMWTPPSRDYMNKALTCQMCELTVNEVDTVLLCDACEKGFHLKCLQSSVLRGIPRGEWHCMKCLTLSGGKPLPPKYGRVMRSSNTPPKMTSNMVGNHPSSEKAGVLDSRVSTQKLTTNRSTAPIGATGNNNVESQSDTKTVDIKEIQGNTISSSIKHMDEQLDPNNSMRSSSAASGASIGSLGERSAQQITSSEVSTCKEKTLASEPEILSKLSRSVECDNLQLSQTLQVEQTVLQDNAEVSSDKCLGSSLTNNYQKESHVGEILTYDIKRDEQDVSLANSDGSLGINNEDRQYYALYSDGSYSVQWIGDIIQLVNEKKFYQTCCVDGVTYRLQDHVLFPSNHGKLTPSKLQSMWEDSQTGLKWVSVTKCYFPGDLPGNICHPCISEVSEVYESNSRRNEKAGSIQGPCEVLPYDKFKQETDRRSQLGLEASARLCPIFLCRWFYDEVKKLFQPVIS 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1976 838 ProSiteProfiles Zinc finger PHD-type profile. 395 447 IPR019787 -
Glsi10g1976 838 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 836 - -
Glsi10g1976 838 ProSiteProfiles BAH domain profile. 710 837 IPR001025 GO:0003682
Glsi10g1976 838 CDD BAH 709 836 - -
Glsi10g1976 838 MobiDBLite consensus disorder prediction 541 579 - -
Glsi10g1976 838 ProSitePatterns Zinc finger PHD-type signature. 398 444 IPR019786 -
Glsi10g1976 838 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 387 459 IPR013083 -
Glsi10g1976 838 MobiDBLite consensus disorder prediction 1 48 - -
Glsi10g1976 838 SMART PHD_3 397 445 IPR001965 -
Glsi10g1976 838 SUPERFAMILY FYVE/PHD zinc finger 388 452 IPR011011 -
Glsi10g1976 838 Gene3D - 689 837 IPR043151 -
Glsi10g1976 838 Pfam PHD-finger 398 445 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1976 Glsi-ChrGlsi10 14017859 14023576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1976 398 462 Core DNA Replication Machinery Family AT4G12620 36.486 5.39e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi10g1976 PHD 8.8e-08 CL0390