LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi10g1964	ATGAGGAGGGGTAGAGGAGCTGCGCCTGTCAAAACGGTGGCTGCAGCGGCGGCGGCGGCGGTCGAACCCAACGGATCCGGGTCAAGGACGATTTTAAAAGAGCCGAGGTACCGGGGCGTGAGGAAGAGACCGTGGGGTAGATTCGCCGCCGAGATTAGAGACCCTTTAAGGAAAGCCAGGGTCTGGCTAGGCACCTTCGACTCCGCCGAAGAAGCTGCTCGGGCCTACGACGCTGCCGCTCGGTCCCTCCGAGGATCCAAGGCCAAGACCAACTTCCCTCTTTCCCCTTCTCTCTCACCCTTCCGTTACCACAACAACCCCAACGATCCCTTTTTAGATCACCGGTTGTACGCCACAAATGGCTTCCAAGAGCCCCAGATTAATCCCCAGAGGCCCACCTCCAGCGGCATGAGCAGCACCGTCGAGTCTTTCAGTGGGCCGCGCCCTCCGTCCGCGACGCTTCCTTCGGCGCCGTTGACCGCCACCACCCGAAGGTACCCGCGGACGCCGCCGGTCGTGCCGGAAGATTGCCACAGCGACTGCGATTCGTCGTCCTCGGTGATTGATGACGGTGATATTGCATCCTCATCTTTCCGTCATCCGTTGCCCTTCGATCTCAACTTCCCTCCGTTGGAGGATTCGGACATGGTTTGTGATGATCTACACTGCACAGATCTGTGCCTCTGA	687	0.5983	MRRGRGAAPVKTVAAAAAAAVEPNGSGSRTILKEPRYRGVRKRPWGRFAAEIRDPLRKARVWLGTFDSAEEAARAYDAAARSLRGSKAKTNFPLSPSLSPFRYHNNPNDPFLDHRLYATNGFQEPQINPQRPTSSGMSSTVESFSGPRPPSATLPSAPLTATTRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSFRHPLPFDLNFPPLEDSDMVCDDLHCTDLCL	228

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi10g1964	228	SMART	rav1_2	36	99	IPR001471	GO:0003700\|GO:0006355
	Glsi10g1964	228	CDD	AP2	35	95	IPR001471	GO:0003700\|GO:0006355
	Glsi10g1964	228	PRINTS	Ethylene responsive element binding protein signature	37	48	IPR001471	GO:0003700\|GO:0006355
	Glsi10g1964	228	PRINTS	Ethylene responsive element binding protein signature	59	75	IPR001471	GO:0003700\|GO:0006355
	Glsi10g1964	228	FunFam	Ethylene-responsive transcription factor 2	36	94	-	-
	Glsi10g1964	228	MobiDBLite	consensus disorder prediction	123	163	-	-
	Glsi10g1964	228	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	26	191	-	-
	Glsi10g1964	228	SUPERFAMILY	DNA-binding domain	36	95	IPR016177	GO:0003677
	Glsi10g1964	228	ProSiteProfiles	AP2/ERF domain profile.	36	93	IPR001471	GO:0003700\|GO:0006355
	Glsi10g1964	228	Gene3D	AP2/ERF domain	36	95	IPR036955	GO:0003700\|GO:0006355
	Glsi10g1964	228	MobiDBLite	consensus disorder prediction	123	165	-	-
	Glsi10g1964	228	Pfam	AP2 domain	35	85	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi10g1964	Glsi-ChrGlsi10	13916224	13916910	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi10g1964	1	228	AP2-EREBP Transcription Factor Family	AT1G50640	61.983	4.10e-64	197

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Glsi10g1964		AP2	1.2e-15	CL0081