Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1947 ATGGTAGTAATGGAGGGACCGGATCAACGGGGGAGGGTTTCAAAATTTCAATTCTCTGAAATGGATTACTCAGACATTGAAAAAGTGGGTGAAACTATTAACCAAGATTGGGAACAAGAACTGAGTCGGTACCAGACGGTGATATCCTCGGGGACCAAGACTAAGAAAATAAAAGCAATGGTCATGCTAGCCCGTGTCTCTAAACATGCCCCTGAGAGTGTATTAGCTCGCATCATACCCCACCTCACTGAGATTCTTGGTGAAAACCATTCAAATCATTTAGGTTGTTCTCTTCAAAAGGCTGCTGCTTATTGCTTAAAATGTATAGCTAGTCGAGGTGATGGTGGGTTGGCCATGGAAATAGGAAGGCATGGTGCAGCACATTCTCTAGTGAGGTGGTTGTCACATTCTGATGTGGAGTTTAAAGAAGTCCTGATTAAATGTCTGCTAATTGTTGTTTCTTTTTGTAATACTAGTCGCACAACTTTAGCTAGCCATGGCGGGCTAGAAATTCTCATCAGTTTGTTAAATTCATGTACAGATGATATTAGACTATACCTATTAGAAATTTTGAGTGCATTGGCATTGCTGAAGGAGGTTAGGAGGGCACTCACTAGATTAGGAGGTCTTCACTTTCTTGTGGAGGCTGCTAGATGTGGCAGCATGGTCTCTAGGGAAAGAGCTTGTCAAGCAATCGGATTACTTGGAGTCACAAGGCGTGCCAGGCGTATGCTTGTTGAATTGGGAGTGATACCGGTGCTTGTTGAGTTGCTTCGTGATGGAGATCACACCATGAAACTTGTGGCTGGTAATGCTCTTGGTGTGATCTCTGCTCATGTTGATTACATCAGACCAGTTGCTCAAGCTGGGGCTATTGGTCTTTATGCTGAGCTTCTTGAAGGACCTGAACCTTCTGGTAAGGAGATAGCTGAGGATGTGTTTTGTATATTGGCTGTTGCTGAGGAAAATGCTGTTGAAATCGCTGGACACTTGGTGAGAATTCTTAGAGAAGGTGATGATGAATCAAAGGCAGCTGCTGCTGATGTGGTTTGGGATCTCTCTGGTTACAAGCACTCTACATCCGTGGTCAGGAAGTCAGGTGTGATTCCTATCTTAGTTGAGCTTTTGAGGAGCGGAAGTGAAGAGGTAAAGGAGAATGTTTCTGGGGCATTTGCTCAGCTGAGTTATGATGAGGCAGATAGAATGGAACTTGCTGAAGCGGGAGCAATCCCAATTCTCATTGGCACACTGCATGATGAGTTTGAGGAACTGAGGGACAATGCCGCGGAGGCCCTTGTCAATTTTGCTGAAGATCCATTATACCATGATAGAGTATCTGATGCAATTGATGTTCCTTCATTTAGAGATATGCAGAACAGACTAATTCATCTTCATGCTTCAAACGAGCATATGGCTAGATCCTTAGGAAGGATGAGTGTTGAGCAGCTCACTTGGAACCACGATCTTGTTTAA 1473 0.4399 MVVMEGPDQRGRVSKFQFSEMDYSDIEKVGETINQDWEQELSRYQTVISSGTKTKKIKAMVMLARVSKHAPESVLARIIPHLTEILGENHSNHLGCSLQKAAAYCLKCIASRGDGGLAMEIGRHGAAHSLVRWLSHSDVEFKEVLIKCLLIVVSFCNTSRTTLASHGGLEILISLLNSCTDDIRLYLLEILSALALLKEVRRALTRLGGLHFLVEAARCGSMVSRERACQAIGLLGVTRRARRMLVELGVIPVLVELLRDGDHTMKLVAGNALGVISAHVDYIRPVAQAGAIGLYAELLEGPEPSGKEIAEDVFCILAVAEENAVEIAGHLVRILREGDDESKAAAADVVWDLSGYKHSTSVVRKSGVIPILVELLRSGSEEVKENVSGAFAQLSYDEADRMELAEAGAIPILIGTLHDEFEELRDNAAEALVNFAEDPLYHDRVSDAIDVPSFRDMQNRLIHLHASNEHMARSLGRMSVEQLTWNHDLV 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1947 490 ProSiteProfiles HEAT repeat profile. 250 281 IPR021133 -
Glsi10g1947 490 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 34 447 - -
Glsi10g1947 490 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 367 409 IPR000225 GO:0005515
Glsi10g1947 490 SMART arm_5 156 196 IPR000225 GO:0005515
Glsi10g1947 490 SMART arm_5 397 437 IPR000225 GO:0005515
Glsi10g1947 490 SMART arm_5 238 278 IPR000225 GO:0005515
Glsi10g1947 490 SMART arm_5 197 237 IPR000225 GO:0005515
Glsi10g1947 490 SMART arm_5 356 396 IPR000225 GO:0005515
Glsi10g1947 490 SMART arm_5 312 355 IPR000225 GO:0005515
Glsi10g1947 490 SMART arm_5 65 111 IPR000225 GO:0005515
Glsi10g1947 490 Gene3D - 358 460 IPR011989 -
Glsi10g1947 490 SUPERFAMILY ARM repeat 31 437 IPR016024 -
Glsi10g1947 490 Gene3D - 43 357 IPR011989 -
Glsi10g1947 490 Pfam Armadillo/beta-catenin-like repeat 242 278 IPR000225 GO:0005515
Glsi10g1947 490 Pfam Armadillo/beta-catenin-like repeat 360 395 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1947 242 452 U-box Gene Family AT2G23140 26.606 2.32e-08 54.7