Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1944 ATGTTGTTTCCGGAGCCGAAGAATTTCTCAGAACCAAATGAAACCATAGGTGTCTCGGGATCTCAGAACGATTGCGTCGAAGAGATTGTTACTGTTGCGGATTTGGCAATCAGAACAGTAGCCTGGGGTGCCCTTTGTGTTTATTTGCACTTTAGATTCTCCAATTCTGGGGACAGAAGTTTCCCCTGTTTCTTCAGAGTTTGGTGCTGGGTCTACTCTTCTGTTTCTTGTTCTTGCCTTGTAGTTGATTTTGTACTTCATAGAAAACATGTTTTCCTCCCAATTATATACGTTGTTTCTGATATCGTTTCCTCTCTCACGGGCTTGTTTCTCTGTTATATGGGGTTTTCTGCCAACAAGGAGGAAAAACTTGCCCTTCTTGAAGAACCCCTTTTGAATGGGTCAGATAAGAGCAGAGCAAGCCCTTATTCAAAGGCTGGGTTTTTCAGTATTCTTACTTTCTCATGGATGAATCCTCTAATTTCTGTTGGAAATAAGAAGACTTTAGACCTTGAAGATCTTCCCTTACTTTCTAGGGATGATAGTGTCTATGGGGCCTTTCCAACTTTCAGAAACAAGCTTGAAGCAGAGTGTGGTAGTATTAGCAAAGTGACCACTCTCAAGCTAGCGAAGGCCTTAATCTTCTCAACATGGAAAGGGATTCTTTTATCAGCTTTATTTGCACTCTTCTACACATTTGCTTCTTATGTTGGTCCTTTTCTTATTGAGATATTGGTTCAATACCTCAATGGGCAGCAAAAGTTTGAAAATGAGGGTTATATTTTGGCTATGGCATTTTTTGGTGCAAAGCTTGTGGAGTGCCTTTCACAGAGGCACTGGATGTTTAGGTTCCAGCAAGTTGGGGTTAGGGTTCAATCAATGTTGGTGGCAATGATCTACTCTAAAAGTTTGACCCTTTCATGCCAATCAAAGGAGGGACGCACTAGTGGGGAAATCATTAACTTAATGACTGTTGATGCTGCTAGGGTTGGTGAGTTTAGTTGGTACATGCATGATCCATGGATGGCTGTTCTGCAAGTTACTTTGGCCTTGGTTATTCTTTATAGAAGTGTTGGGATTGCTTCTATAGCTGCTTTTGTTGCTACTGTTCTTCTGATGTTGGCAAATTTGCCCTTGGGCTCATTGCAAGAGAAGTTTCAAGGCAAGTTAATGGAGTTAAAAGATAGAAGAATGAAGGCCACATCTGAGGTTTTAAACAACATGAAGATTCTAAAGTTACAAGCATGGGAGATGAAGTTTCTATCAAGGATTATTGAGATTAGGAAGTTTGAGACAGGATGGCTAAAGAAATTTTTAGTCACTAATGGATTGACAAGATTTTTCTTCTCTTCTGCCCCAACTTTTATTGCTATGGTTACTTTTGGTGCTTGTATTCTTATAGGGGTCCCACTTGACTCAGGGAAGATCTTAGCTGCATTGGCAACATTCAGAATTCTTCAGCAGCCCATCTACAGCCTTCCTGACACAATCTCAATGATAGCACAAACTAAAGTTTCCCTCGATCGGATTGCATCATTCCTTTGTCTTGAAGATTTGCAGCCTGATGTTATAGAGAAGCTTCCCATGGGTAGTTCTGATACAGCAATTGAGATAGTTGATGGAAGTTTCTCTTGGGATTTATCTTCACATATTCCTACATTGCAAAACATAAATGTCAAAGTTGTCCATGGCATGAGGGTTGCAGTTTGTGGTACCGTTGGTTCGGGAAAGTCGAGTTTACTTTCTTGTATACTAGGAGAAGTATCAAAGTTCTCTGGGACACTGAAGGTATGTGGAACAAAGGCTTATGTTGCTCAATCTCCATGGATACAAAGTGGCAAGATAGAAGAGAACATACTATTTGGGAAAGAGATGGATAGGGAAAAATATCAGAAGGTTCTAGAAGCATGTTCCTTGACAAAAGACCTAGAGGTTCTACCATTTGGTGATCAAACCATTATTGGAGAGAGGGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTACAGATAGCTCGTGCTCTATACCAAGATGCTGATATATATCTGTTTGACGATCCTTTCAGTGCAGTGGATGCCCATACAGGATCCCACCTCTTCAAGGAGTGTTTGCTTGGCCTTTTGAATTCAAAAACAGTGTTATATGTGACTCATCAAGTAGAGTTCTTACCTGATGCTGATATAATATTGGTCATGAGAGATGGAAGGATAAGTCAATCTGGGAAGTATAATGACATCCTCAACACAGGAACTGACTTTATGGAGCTTGTGGGTGCACATAGAGAGGCCTTGTCTGCAATTAATTCCTTAGAGAGAAGGCCCACCTTTAAGAATATCACTGTGGATGATACAGATTCATTAAGTGAATTTGGACTTGAGCAAAAAGTAGAGAACAAAGATGTTCAAAATGGTAAAACAGAAGATAAAGTTGGGCCAAAAGGCCAGCTTGTTCAAGAAGAAGAAAGAGAAAAGGGTAAAGTTGGGTTTGAAGTGTACTGGAAATACATCACAACAGCATATGGAGGAGCTCTTGTACCCTTCATATTACTTGGGCAAGTGCTTTTTCAGGTTCTTCAAATTGGTAGCAATTATTGGATGGCTTGGGCAACTCCTGTATCTGCAACTGTAGACCCTGCTGTTGGAAGCCTTACACTTATGGTTGTCTATGTTGCTTTGGCAACTGGAAGTTCCTTTTGCAACCTTGCTAGAACAATGCTTCTTTATATAGCCGCATACAAGACATCCACGATGCTCTTCAATAAAATGCATTTGTGCTTCTTCCGAGCCCCCATGTCATTTTTTGATGCCACTCCCAGTGGGCGGATGCTTAATAGAGCTTCTACGGACCAAAGTGCTATAGATATGAGTGTTCCAAATCTGGTAGCGGCAGTTGCCTTCTATCTTATTCAACTCTTGGGAAATATTGCTGTGATGTCTCAAGTTGCATGGCAGGTTTTCATAATATTTATTCCTGTGGTTGCAGCTTGCATATGGTATCAGCAATACTACTCAGAATCAGCACGGGAATTGGCACGGTTGGTTGGTATATGCGAAGCTCCAGTTATACAACATTTTGCTGAAACCATTTCTGGATCAACAACAATCAGAAGTTTTGACCAAGAATCAAGATTTCAGGACAAAAATATGAAGTTAATAGACAGCTATGCCCAGCCCAAGTTATACACTGCAACTGCAATGGAATGGCTGTGTTTCCGATTGGATATGCTATCTTCTATTACATTTGCCTTCTGTTTGATATTTTTAATATCTTTTCCAGATGCAATTAGTGATCCTGGCATTGCGGGGTTGGCTGTGACATACGGGCTTAATCTAAACACACTGCAAGCTGCACTAATATGGTTTCTTTGCAATATGGAGAACAAGATTATATCAGTGGAAAGAATATTTCAGTACACTTCCATTCCAAGCGAGCCTCCTCTTGTAATTGAAGAAAACAGACCAGATCATTCTTGGCCATCATTTGGAGAGGTTCATATCCAAGATTTACAGGTTCGGTATGCTCTTCATTTGCCTCTAGTCTTGAGAGGTCTTACTTGCACTTTCACTGCTGGAGGAAAAACTGGCATTGTGGGGAGAACAGGCAGTGGAAAATCAACTCTAGTACTGACCCTTTTTCGACTTGTTGAACCTGTTGCTGGTCAAATATTGATAGATGGCACCAATATCTCTTCGATTGGACTTCATGATTTACGGTCCAGACTGAGCATTATTCCTCAGGATCCAACCATGTTTCAGGGGACCGTAAGAAGTAACCTAGACCCACTAGAAGAGTACACTGATGAACAGATATGGGAGGCTCTAGATATGTGCCAACTTGGAGATGAAGTAAGGAAAAAGGAAGAAAAGCTCGATTCCATAGTTACTGAGAATGGAGATAACTGGAGTATGGGTCAGAGGCAGCTGGTCTGCCTTGGCCGGGTTCTACTCAAAAAAAGCAAGATCTTGGTGCTCGATGAAGCCACTGCATCGGTTGATACAGCAACAGATAACATTATTCAGCAAACCCTGAAGCAACATTTTTCAGACTGCACAGTTATCACCATTGCACACAGAATAACTTCTATTCTTGATAGTGACATGGTTCTGTTTCTGAGTCAAGGGCTTGTTGAGGAGTATGATTCACCCAAAAGATTGCTTGAGAACAAATCTTCATCTCTTGCTCAGCTAGTTGCAGAATACACAAGAAGGTCAAACTCTGGTTTTGAAACTTGA 4233 0.4099 MLFPEPKNFSEPNETIGVSGSQNDCVEEIVTVADLAIRTVAWGALCVYLHFRFSNSGDRSFPCFFRVWCWVYSSVSCSCLVVDFVLHRKHVFLPIIYVVSDIVSSLTGLFLCYMGFSANKEEKLALLEEPLLNGSDKSRASPYSKAGFFSILTFSWMNPLISVGNKKTLDLEDLPLLSRDDSVYGAFPTFRNKLEAECGSISKVTTLKLAKALIFSTWKGILLSALFALFYTFASYVGPFLIEILVQYLNGQQKFENEGYILAMAFFGAKLVECLSQRHWMFRFQQVGVRVQSMLVAMIYSKSLTLSCQSKEGRTSGEIINLMTVDAARVGEFSWYMHDPWMAVLQVTLALVILYRSVGIASIAAFVATVLLMLANLPLGSLQEKFQGKLMELKDRRMKATSEVLNNMKILKLQAWEMKFLSRIIEIRKFETGWLKKFLVTNGLTRFFFSSAPTFIAMVTFGACILIGVPLDSGKILAALATFRILQQPIYSLPDTISMIAQTKVSLDRIASFLCLEDLQPDVIEKLPMGSSDTAIEIVDGSFSWDLSSHIPTLQNINVKVVHGMRVAVCGTVGSGKSSLLSCILGEVSKFSGTLKVCGTKAYVAQSPWIQSGKIEENILFGKEMDREKYQKVLEACSLTKDLEVLPFGDQTIIGERGINLSGGQKQRVQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLNSKTVLYVTHQVEFLPDADIILVMRDGRISQSGKYNDILNTGTDFMELVGAHREALSAINSLERRPTFKNITVDDTDSLSEFGLEQKVENKDVQNGKTEDKVGPKGQLVQEEEREKGKVGFEVYWKYITTAYGGALVPFILLGQVLFQVLQIGSNYWMAWATPVSATVDPAVGSLTLMVVYVALATGSSFCNLARTMLLYIAAYKTSTMLFNKMHLCFFRAPMSFFDATPSGRMLNRASTDQSAIDMSVPNLVAAVAFYLIQLLGNIAVMSQVAWQVFIIFIPVVAACIWYQQYYSESARELARLVGICEAPVIQHFAETISGSTTIRSFDQESRFQDKNMKLIDSYAQPKLYTATAMEWLCFRLDMLSSITFAFCLIFLISFPDAISDPGIAGLAVTYGLNLNTLQAALIWFLCNMENKIISVERIFQYTSIPSEPPLVIEENRPDHSWPSFGEVHIQDLQVRYALHLPLVLRGLTCTFTAGGKTGIVGRTGSGKSTLVLTLFRLVEPVAGQILIDGTNISSIGLHDLRSRLSIIPQDPTMFQGTVRSNLDPLEEYTDEQIWEALDMCQLGDEVRKKEEKLDSIVTENGDNWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTLKQHFSDCTVITIAHRITSILDSDMVLFLSQGLVEEYDSPKRLLENKSSSLAQLVAEYTRRSNSGFET 1410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1944 1410 FunFam ABC transporter C family member 5 808 1145 - -
Glsi10g1944 1410 CDD ABC_6TM_ABCC_D2 845 1139 IPR044726 GO:0140359
Glsi10g1944 1410 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1164 1398 IPR003439 GO:0005524
Glsi10g1944 1410 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 222 502 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi10g1944 1410 FunFam ABC transporter C family member 3 1147 1399 - -
Glsi10g1944 1410 CDD ABCC_MRP_domain1 536 736 - -
Glsi10g1944 1410 Gene3D - 524 777 IPR027417 -
Glsi10g1944 1410 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 143 1399 - -
Glsi10g1944 1410 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 847 1127 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi10g1944 1410 Gene3D - 1147 1400 IPR027417 -
Glsi10g1944 1410 FunFam ABC transporter C family member 5 521 768 - -
Glsi10g1944 1410 Pfam ABC transporter 1182 1329 IPR003439 GO:0005524
Glsi10g1944 1410 FunFam ABC transporter C family member 10 205 518 - -
Glsi10g1944 1410 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 536 759 IPR003439 GO:0005524
Glsi10g1944 1410 SUPERFAMILY ABC transporter transmembrane region 845 1146 IPR036640 GO:0005524|GO:0016020
Glsi10g1944 1410 Gene3D ABC transporter type 1, transmembrane domain 808 1145 IPR036640 GO:0005524|GO:0016020
Glsi10g1944 1410 Gene3D ABC transporter type 1, transmembrane domain 200 518 IPR036640 GO:0005524|GO:0016020
Glsi10g1944 1410 SMART AAA_5 1190 1375 IPR003593 GO:0016887
Glsi10g1944 1410 SMART AAA_5 563 736 IPR003593 GO:0016887
Glsi10g1944 1410 CDD ABCC_MRP_domain2 1162 1382 - -
Glsi10g1944 1410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1156 1390 IPR027417 -
Glsi10g1944 1410 SUPERFAMILY ABC transporter transmembrane region 214 521 IPR036640 GO:0005524|GO:0016020
Glsi10g1944 1410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 532 758 IPR027417 -
Glsi10g1944 1410 Pfam ABC transporter transmembrane region 222 489 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi10g1944 1410 Pfam ABC transporter transmembrane region 849 1089 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi10g1944 1410 Pfam ABC transporter 554 688 IPR003439 GO:0005524
Glsi10g1944 1410 CDD ABC_6TM_ABCC_D1 223 510 IPR044746 GO:0140359
Glsi10g1944 1410 ProSitePatterns ABC transporters family signature. 661 675 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1944 Glsi-ChrGlsi10 13800217 13806186 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1944 536 775 Calmodulin-binding Proteins AT2G36910 28.846 2.51e-25 112