Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1941 ATGATTACAAAGAAAGAACATGTTGTTCCGGAGCCGAAGAATTTCTCAGAACGAAATGAAACCATAGGTGTCTCGGGATCTCAGAACGATTACGTCGAAGAGATTGTTACCGTTGTGGATTTGGCAATCAGAACAGTAGCCTGGGGTGCCCTTTGTGTTTATTTGCACTCTAGATTCTCCAATTCTGGGGACAGAAATTTCCTCCGTTTCTTCAGAGTTTGGTGCTGGGTCTACTCCTCTGTTTCTTGTTCTTGCCTTGTAGTTGACTATGTACTTCATAAAAAACATGTTTTCCTCCCAATTATATACGTTGTTTCTGATATCGTTTCCTCTCTCACGGGCTTGTTTCTCTGTTATATGGGGTTTTATGCCAACAAGGAGGCAAAACTTGCCCTTCTTGAAGAACCCCTTTTGAATGGGTCAGATAAGAGCAGAGCAAGCCCTTATTCAAAGGCTGGGTGTTTCAGTATTCTTACTTTCTCATGGATGAATCCTCTAATTGCTGTTGGAAATAAGAAGACTTTAGACCTTGAAGATCTTCCCTTACTTTCTAGGGATGATAGTGTCTATGGGGCCTTTCCAACTTTCAGAAACAAGCTTGAAGCAGAGTGTGGTAGTATTAGCAAAGTGACCACTCTCAATCTAGCGAAGGCCTTAATCTTCTCAACATGGAAAGGGATTCTTTTATCAGCTTTATTTGCACTCTTCTACACATTTGCTTCTTATGTTGGCCCTTTTCTTATTGAGATATTGGTTCAATACCTCAATGGGCAGCAAAAGTTTGAAAATGAGGGTTATATTTTGGCTATGGCATTTTTTGGTGCAAAGCTTGTGGAGTGCCTTTCACAGAGGCACTGGATGTTTAGGCTCCAGCAAGTTGGGATTAGGGTTCAATCAATGTTGGTGGCAATGATCTACTCTAAAAGTTTGACCCTTTCATACCAATCAAAGGAGGGACGCACTAGTGGGGAAATCATCAACTTAATGACTGTTGATGCTGCTAGGGTTGGTGAGTTTAGTTGGTACATGCATGATCCATGGATGGCTGTTCTGCAAGTTACTTTGGCCTTGGTTATTCTTTATAGAAGTGTTGGGATTGCTTCTATAGCTGCTTTCGTTGCTACTGTTCTTCTGATGTTGGCAAATTTGCCCTTGCTCTCATTGCAAGAGAAGTTTCAAGGCAAGTTAATGGAGTTAAAAGATAGAAGAATGAAGGCCACATCTGAGGTTTTAAACAACATGAAGATTCTGAAGTTACAAGCATGGGAGATGAAGTTTCTATCAAGGATTTTTGAGATTAGGAAGTTTGAGACAGGATGGCTAAAGAAATTTTTAGTCACTAATGGATTGGCAAGATTTTTCTTCTCTTCTGCCCCAACTTTTATTGCTATGGTTACTTTTGGTGCTTGTATTCTTATAGGGGTCCCACTTGACTCAGGGAAGATCTTAGCTGCACTGGCAACGTTCAGAATTCTTCAGCATCCCATCTACAGCCTTACTGACACAATCTCAATGATAGCACAAACTAAAGTTTCCCTCGATCGGATTGCATCATTCCTTTGTCTTGAAGATTTGCAGCCTGATGTTATAGAGAAGCTTCCAATGGGTAGTTCTGATACAGCAATCGAGATAGTTGATGGAAGTTTCTCTTGGGATTTATCTTCACATATTCCTACATTGCAAAACATACATGTCAAAGTTGTACATGGCATGAGGGTTGCAGTTTGTGGCACTGTCGGTTCGGGAAAGTCGAGTTTACTTTCTTGTATACTAGGAGAAGTATCAAAGCTCTCTGGGACACTGAAGGTATGTGGAACAAAGGCTTATGTTGCTCAATCTCCATGGATACAAAGTGGCAAGATAGAAGAGAACATACTATTTGGGAAAGAGATGGATAGGGAAAAATATCAGAAGGTTCTAGAAGCATGTTCCTTGACAAAAGACCTAGAGGTTCTACCATTTGGTGATCAAACCATTATTGGAGAGAGGGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTACAGATAGCTCGTACTCTATACCAAGATGCTGATATATATCTGTTTGACGATCCTTTCAGTGCAGTGGATGCCCATACAGGATCCCACCTCTTCAAGGAGTGTTTGCTTGGCCTTTTGAATTCAAAAACAGTGTTATATGTGACTCATCAAGTAGAGTTCTTACCTGATGCTGATATAATATTGGTCATGAGAGATGGAAGGATAAGTCAATCTGGGAAGTATAATGACATCCTCAACTCAGGAACTGACTTTATGGAGCTTGTGGGTGCACATAGAGAGGCCTTGTCTGCAATTAATTCCTTAGAGAGAAGGCCCACGTTTAAGAATATCACTGTGGATGACACAGATTCATTAAGTGAATTTGGACTTGAGCAAAAATTAGAGAACAAAGATATTCAAAATGGTAAAACAGAAGATAAAGTTGGGCCAAAAGGCCAGCTTGTTCAAGAAGAAGAAAGAGAAAAGGGTAAAGTTGGGTTTGAAGTGTACTGGAAATACATCACAACAGCATATGGAGGAGCTCTTGTACCCTTCATATTACTTGGGCAAGTGCTTTTTCAGGTTCTTCAAATTGGTAGCAATTATTGGATGGCTTGGGCAACTCCTGTATCTGCAACTGTAGACTCTGCTATTGGAAGCCTTACACTTATGGTTGTCTATGTTGCTTTGGCAACTGGAAGTTCCTTTTGCAACCTTGCTAGAACAATGCTTGTTTATGTAGCCGCATACAAGACATCCACGATGCTCTTCAATAAAATGCATCTGTGCTTCTTCCGAGCCCACATGTCATTTTTCGATGCCACTCCCAGTGGGCGAATCCTTAATAGAGCTTCTACAGACCAAAGTGCTATAGATATGAGCATTGCAAATCTGGTAGCGGCAGTTGCCTTCTCTCTTATTCAACTCTTGGGAAATATTGCTGTGATGTCTCAAGTTGCATGGCAGGTTTTCATAGTATTTATTCCTGTGGTTGCAGCTTGCATATGGTATCAGCAATACTACTCAGAATCAGCACGGGAATTGGCACGGTTGGTTGGTATATGCGAAGCTCCAGTTATACAACATTTTGCTGAAACCATTTCTGGATCAACAACAATCAGAAGTTTTGACCAAGAATCAAGATTTCAGGACAAAAATATGAAGTTGATAGACAGCTATGCCCAGCCCAAGTTATACACTGCAACTGCAATGGAATGGCTGTGTTTCCGATTGGATATGCTTTCTTCTATTACATTTGCCTTCTGTTTGATATTTTTAATATCTTTTCCAGATGCAATTAGTGATCCTGGCATTGCGGGGTTGGCCGTGACATACGGGCTTAATCTAAACACACTGCAAGCTGCACTAATCTGGTGTCTTTGCAATATGGAGAACAAGATTATATCAGTGGAAAGAATATTTCAGTACACTTCCATTCCAAGTGAGCCTCCTCTTGTAATTGAAGAAAACAGACCAGATCATTCTTGGCCATCATTTGGAGAGGTTCATATCCAAGATTTACAGGTTCGGTATGCTCTTCATTTGCCTCTAGTCTTGAGAGGTCTTACATGCACTTTCACTGCTAGAGGAAAAACTGGCATTGTGGGGAGAACAGGTAGTGGAAAATCAACTCTAGTACTGACCCTTTTTCGACTTGTTGAACCTTTTGCTGGTCAAATATTGATAGATGGCACCAATATCTCTTCGATTGGACTTCATGATTTACGGTCCAGACTGAGCATTATTCCTCAGGATCCAACCATGTTTCAGGGGACCGTAAGAAGTAACCTAGACCCACTAGAAGAGTACACTGATGAACAGATATGGGAGGCTCTAGATATGTGCCAACTTGGAGATGAAGTAAGGAAGAAGGAAGAAAAGCTCGATTCCATAGTTACTGAGAATGGAGATAACTGGAGTATGGGTCAGAGGCAGCTGGTCTGCCTTGGCCGGGTTCTACTCAAGAAAAGCAAGATCTTGGTGCTCGATGAAGCTACTGCATCGGTCGATACAGCAACAGATAACATTATTCAGCAAACCCTGAAGCAACATTTTTCAGACTGCACAGTTATCACCATTGCACACAGAATAACTTCTATTCTTGATAGTGACATGGTTCTGTTTCTGAGTCAAGAATTAGTGAAGAGGGGAATTATTCTGGCTGCAACTGTTTGTGGTTTATTGGCGTTTGGACGTCGACGAGTCTTTGCAACTGAAGGTGTAATAAATGCAGGATATGGTGTCATTGGACAGAGCATATTGTTGCTTAGGAATACATGGCCTAAAGTGTTACAAGTTCTTCAAATATTTAAGGAGCAGGGGTTGGTACTGGCAATGCTTTTGGGTCTTTCAGCTTTTTTCTCTATGGCAGAGACTTCAATTATTACACTTTGGCCTTGGAAGGTTCGTGAGTTGGCAGAAAAGGAGTCTGAAGATGGTGTCTTCAGGCTACTTCGAAGTGATGTTACTCGGTTCCTTACAACTATACTTATTGGCACAACGTATTTCCCTTTGACTGATTCTAGCTATTTCTATGTTCGCAGTGTGGTCAATATTGGAGCAACAGCTCTTGTCACAGATGCTGCAACCGCAATGTTTGGTGAAGCTGGTGTTAGTGCAGCAACAGGATTGATGACTGTCTGA 4647 0.4125 MITKKEHVVPEPKNFSERNETIGVSGSQNDYVEEIVTVVDLAIRTVAWGALCVYLHSRFSNSGDRNFLRFFRVWCWVYSSVSCSCLVVDYVLHKKHVFLPIIYVVSDIVSSLTGLFLCYMGFYANKEAKLALLEEPLLNGSDKSRASPYSKAGCFSILTFSWMNPLIAVGNKKTLDLEDLPLLSRDDSVYGAFPTFRNKLEAECGSISKVTTLNLAKALIFSTWKGILLSALFALFYTFASYVGPFLIEILVQYLNGQQKFENEGYILAMAFFGAKLVECLSQRHWMFRLQQVGIRVQSMLVAMIYSKSLTLSYQSKEGRTSGEIINLMTVDAARVGEFSWYMHDPWMAVLQVTLALVILYRSVGIASIAAFVATVLLMLANLPLLSLQEKFQGKLMELKDRRMKATSEVLNNMKILKLQAWEMKFLSRIFEIRKFETGWLKKFLVTNGLARFFFSSAPTFIAMVTFGACILIGVPLDSGKILAALATFRILQHPIYSLTDTISMIAQTKVSLDRIASFLCLEDLQPDVIEKLPMGSSDTAIEIVDGSFSWDLSSHIPTLQNIHVKVVHGMRVAVCGTVGSGKSSLLSCILGEVSKLSGTLKVCGTKAYVAQSPWIQSGKIEENILFGKEMDREKYQKVLEACSLTKDLEVLPFGDQTIIGERGINLSGGQKQRVQIARTLYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLNSKTVLYVTHQVEFLPDADIILVMRDGRISQSGKYNDILNSGTDFMELVGAHREALSAINSLERRPTFKNITVDDTDSLSEFGLEQKLENKDIQNGKTEDKVGPKGQLVQEEEREKGKVGFEVYWKYITTAYGGALVPFILLGQVLFQVLQIGSNYWMAWATPVSATVDSAIGSLTLMVVYVALATGSSFCNLARTMLVYVAAYKTSTMLFNKMHLCFFRAHMSFFDATPSGRILNRASTDQSAIDMSIANLVAAVAFSLIQLLGNIAVMSQVAWQVFIVFIPVVAACIWYQQYYSESARELARLVGICEAPVIQHFAETISGSTTIRSFDQESRFQDKNMKLIDSYAQPKLYTATAMEWLCFRLDMLSSITFAFCLIFLISFPDAISDPGIAGLAVTYGLNLNTLQAALIWCLCNMENKIISVERIFQYTSIPSEPPLVIEENRPDHSWPSFGEVHIQDLQVRYALHLPLVLRGLTCTFTARGKTGIVGRTGSGKSTLVLTLFRLVEPFAGQILIDGTNISSIGLHDLRSRLSIIPQDPTMFQGTVRSNLDPLEEYTDEQIWEALDMCQLGDEVRKKEEKLDSIVTENGDNWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTLKQHFSDCTVITIAHRITSILDSDMVLFLSQELVKRGIILAATVCGLLAFGRRRVFATEGVINAGYGVIGQSILLLRNTWPKVLQVLQIFKEQGLVLAMLLGLSAFFSMAETSIITLWPWKVRELAEKESEDGVFRLLRSDVTRFLTTILIGTTYFPLTDSSYFYVRSVVNIGATALVTDAATAMFGEAGVSAATGLMTV 1548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1941 1548 Gene3D - 1153 1389 IPR027417 -
Glsi10g1941 1548 ProSiteProfiles CNNM transmembrane domain profile. 1434 1548 IPR002550 -
Glsi10g1941 1548 ProSitePatterns ABC transporters family signature. 667 681 IPR017871 GO:0005524|GO:0016887
Glsi10g1941 1548 CDD ABCC_MRP_domain2 1168 1379 - -
Glsi10g1941 1548 Pfam ABC transporter 1188 1335 IPR003439 GO:0005524
Glsi10g1941 1548 Gene3D - 530 783 IPR027417 -
Glsi10g1941 1548 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 542 765 IPR003439 GO:0005524
Glsi10g1941 1548 CDD ABC_6TM_ABCC_D2 851 1145 IPR044726 GO:0140359
Glsi10g1941 1548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1162 1379 IPR027417 -
Glsi10g1941 1548 FunFam ABC transporter C family member 5 814 1151 - -
Glsi10g1941 1548 CDD ABCC_MRP_domain1 542 742 - -
Glsi10g1941 1548 CDD ABC_6TM_ABCC_D1 229 516 IPR044746 GO:0140359
Glsi10g1941 1548 Gene3D ABC transporter type 1, transmembrane domain 208 524 IPR036640 GO:0005524|GO:0016020
Glsi10g1941 1548 Gene3D ABC transporter type 1, transmembrane domain 814 1151 IPR036640 GO:0005524|GO:0016020
Glsi10g1941 1548 Pfam ABC transporter 560 694 IPR003439 GO:0005524
Glsi10g1941 1548 SUPERFAMILY ABC transporter transmembrane region 220 527 IPR036640 GO:0005524|GO:0016020
Glsi10g1941 1548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 538 764 IPR027417 -
Glsi10g1941 1548 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 228 508 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi10g1941 1548 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 149 1379 - -
Glsi10g1941 1548 FunFam ABC transporter C family member 5 527 774 - -
Glsi10g1941 1548 SMART AAA_5 1196 1381 IPR003593 GO:0016887
Glsi10g1941 1548 SMART AAA_5 569 742 IPR003593 GO:0016887
Glsi10g1941 1548 FunFam Multidrug resistance-associated protein member 4 1154 1385 - -
Glsi10g1941 1548 Pfam Cyclin M transmembrane N-terminal domain 1444 1547 IPR002550 -
Glsi10g1941 1548 FunFam ABC transporter C family member 10 211 524 - -
Glsi10g1941 1548 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1170 1404 IPR003439 GO:0005524
Glsi10g1941 1548 Pfam ABC transporter transmembrane region 854 1095 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi10g1941 1548 Pfam ABC transporter transmembrane region 228 495 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi10g1941 1548 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 853 1133 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi10g1941 1548 SUPERFAMILY ABC transporter transmembrane region 851 1151 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1941 Glsi-ChrGlsi10 13762728 13772950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1941 542 781 Calmodulin-binding Proteins AT2G36910 28.462 7.02e-25 111