Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1940 ATGTCGATTGTCTTCTCACCCCACCCGCTAATGTACTCTGCCACTGGTCTTCTCCTAAAACCCATTTTCTTACACTTCTTGTCTGGTTCTCTCCACCTTGTTTTGCTAGTCGTGTTTTTAGTCTCATGGGTGTGGAATAAAATCGTAGTGGGAGCTAGAGATGGGGACAAAGATAAATTCAAGAGCACTCTGCATACGAAAACCCTGTTTTGTTCTTTAGGTGCTTCTGCCTTCAACCTTATCATGTGTCTAGTAAATTACTTCTATTGGTACAGAAATGGTTGGCCAAATGAAAATTTTGTGACCCTTTTGGATTTAGCGCTTAAAACAGTTGCTTGGGGTGTCGTTTGTTCTTCCTTGCACGCAGGTTACTTTAATTCTGGTGAAAGGAGATTTCCATTCTTCTTCAGAGCTTGGTGCGCCTTCTTCCTACTCATTTCTTGTTATTCCTTTATACTGGACATTCTTCTCTATGAAAAACACTTTTCGTTACCCATTCCATACTTGATTTCTGATGTTGTCTCCTCTTTTGTGGGTTTATTCTTCTGTTACGTGGGTTTTTTTGTCAAAAATGAGGGTGAAGATAGCATTCTTCGAGAACCTCTTTTGAATAGTAATACAAATGTTAGTAATGCGTCAGAGTCAAATAAGACCAAGGGGGCAGAAACTGTTACCCCTTACTCAAATGCTGGAATTTTCAGCATTCTTACCTTCTCCTGGATGGGTCCTCTGATTGCTGCCGGCAATGAGAAGACTTTAGACATTGAGGATGTTCCACAACTAGCTAGCGGTTACAGCGTAGTTGGTGCTTTTCCAGCTTTCAGAAATAAGCTTGAGGCAGATTGCGGTACAATAAATAGAGTGACAACACTTAAGCTGGTGAAGTCTTTAATATTCTCATCCTGGAAAGAGATTTTGTTGACGGCTGTTTTTGCACTTTTAGACACCTTGGCTTCCTATGTTGGTCCATATCTAATTGACACTTTTGTTCAATACCTCAATGGACAACAAAAATTTAAGAATGAGGGATATCTTTTGGTGACTGTATTCTTTGGTGCAAAGCTCGTAGAGTGCCTTTCACAGAGGCACTGGTTCTTTAAGTTGCAACAAGTTGGAATTAGGATCCGTGCAATGCTGATTACAACCATCTATAGTAAAAGTTTGACCCTTTCTTGTCAGTCCAAGCAGGTCCACACTTCTGGGGAAATAATCAATTTCATGACGGTTGATGCTGAAAGAGTTGGCGACTTCAGTTGGTGCATGCATGATCTATGGCTGGTCGTTCTACAAGTTGCATTGGCCTTGTTGATTTTGTACAAGAATCTTGGGATTGCTTCCATTGCTGCTTTTGTTGCAACTGTTGTTGTCATGTTGGCAAATGCTCCCTTGGGATCATTGCAAGAGAAGTTTCAAGACAATTTAATGGATTCGAAAGATAGAAGAATGAAGGCCACATCTGAAATTTTAAGGAATATGAGAATTCTCAAACTACAGGGATGGGAAATGAAGTTTCTATCGAAGATTATTGAACTGAGGAAGACAGAGCAAAGTTGGCTAAGGAAATATGTTTATACTTCAGCCATGACCACATTTGTGTTTTGGGGTGCGCCCACATTTGTGTCTGTGGTTACTTTTGGTACTTGTATCCTTATCGGGATCCCGTTTGAATCAGGGAAGATCTTATCTGCACTTGCAACATTCCGAATACTTCAGGAGCCCATTTATAATCTTCCAGACACAATTTCAATGATAGCACAAACTAAGGTTTCTCTTGATAGGATTGCAGCATTCCTTTGTCTCGATGACTTGCAGTCTGATGTTATAGAGAAGCTTCCTAGGGGTAGTTCGAATACAGCAATCAAAGTAGTTGAGGGAAATTTCTCTTGGGATTTATCTTCCACTAATACAACATTGAAAAATATAAATCTCACAATCTTTCATGGCATGAGAATTGCTGTTTGTGGTACTGTCGGCTCAGGCAAGTCTAGTTTACTATCTTGTATTCTGGGAGAAGTGCCAAAGATATCAGGAACTCTGAGGGTATGCGGAGCAAAGGCCTATGTTGCTCAGTCTCCTTGGATACAAAGTGGCAAGATAGAAGAGAATATATTGTTTGGGGAGGAAATGGATAGGGAAAGGTATGAGAAGGTCCTTGAAGCATGCTCCCTGAAGAAGGACCTGGAGATTTTGTCATTTGGTGATCAGACAATTATAGGAGAGAGGGGAATCAATTTGAGTGGCGGACAGAAACAGAGAATACAACTCGCACGTGCTCTTTACCAAGATGCTGATATCTATCTGTTTGATGATCCTTTTAGTGCTGTGGATGCTCATACCGGATCCCACCTCTTCAAGCAATGTTTGTTGGGCCTTCTAAGTTCAAAGACAGTTATTTATGTCACTCATCAAGTAGAGTTCTTACCTGCTGCTGACCTTATCTTGGTCATGAAAGATGGAAAAATTACTCAATGCGGAAAGTATAATGATTTGCTCAACTCGGGGACCGATTTTATGGAACTTGTTGGAGCACATAAAAATGCTTTGTCTGCACTTGACTTGATGGATGGAAGGGCAGAATCTGATAAATTAAGTGCCTCAGAACAAGAGGTAAATATCTCTAGTGTGCAAGGTATAGAAGAAAAAGAGGCAAACAGAGATATGCAAAATGGTAGAACAGATGATGTAGCTGGACCAAAAGGCCAGCTTGTTCAAGAGGAAGAAAGGGAGAAAGGTAGAGTTGGATTTTCAGTTTATTGGAAATATATGACAACAGCATATGGAGGAGCACTTGTACCATTTATATTGTTGGCCCAAATTCTGTTTCAACTTCTTCAAATTGGAAGCAATTATTGGATGGCCTGGGCAACTCCCATTTCTTCAGATGTGAAACCTGCTGTTGGATCCTATACGCTTATAATTGTCTATGTTGCTTTGGCCATAGGAAGTTCTTTCTGCATCCTTGCCAGGGCAATGCTCCTTGAAACAGCTGGTTATAAGACTGCTACTCTACTCTTCAATAAAATGCACTTAAGCATTTTCCGTGCGCCTATGTCATTTTTTGATGCCACTCCAAGTGGACGAATCCTTAATAGAGTTTCTACGGACCAAAGTGTAGTGGATATAAACATTCCTTCTCAAGTTGGAGCATTTGCCTTCTCTATGATCCAGCTTGTGGGAATTATAGCGGTGATGTCTCAGGCTGCATGGCAGGTTTTTGTCATATTTATACCTGTGATATCAATCAGCATTTGGTATCAGCAATATTATTTATCATCAGCCCGAGAATTATCACGTTTGGTTGGAGTATGCAAAGCTCCAGTCATTCAACACTTTGCTGAAACAATTTCAGGATCAACAACCATAAGAAGTTTTGATCAAGAGTCAAGATTTCAGAAAACAAATATGAAACTGATTGATGGATATTCTCGGCCCACGTTCAATATTGCTGGTGCTATGGATTGGTTGACTTTCCGCTTAGATATGTTGTCTTCTATCACATTTGCCTCTTCCTTGATATTCTTGATATCTATTCCCCGGGGAGTCATAGATCCAGGCCTTGCTGGTTTAGCTGTTACGTATGGACTTAATCTGAACATGCTACAAGCTTGGGTAATATGGAATCTTTGCAACATGGAGAACAAAATTATATCAGTAGAAAGATTATTTCAGTACACTTGCATTTCAAGTGAGCCTCCTCTTGTAATAGAAGAAAACCGACCAGATCCTTCTTGGCCGACACATGGAGAAGTTGATATTCATGATTTGCAGGTTCGCTATGCCCCACATCTGCCACTTGTGTTGCGTGGCATCACATGCAAATTTCTTGGAGGACTGAAAACTGGCATTGTTGGGAGAACTGGAAGTGGAAAATCAACTCTCATACAAACACTTTTCCGAATCATTGATCCTACTGCTGGGAAAATTATGATTGATGGCGTCGACATCTCTTCAATTGGACTTCATGATTTGAGGTCTAGACTTAGTATTATTCCTCAGGATCCAACCATGTTTGAAGGGACAGTAAGAAGTAATCTAGATCCACTGGAAGAGTATAGAGATGAACATATTTGGGAGGCTCTGGATAAGTGTCAACTGGGAGATGAAGTTAGAAAGAAAGAAGGAAAGCTAGACTCTGCAGTTAGCGAGAATGGTGAGAATTGGAGTATGGGTCAGAGGCAGTTGGTGTGCCTTGGTAGGGTCCTACTAAAGAGAAGTAAGGTGTTGGTGCTTGATGAAGCTACTGCATCAGTTGATACGGCCACAGATAATTTGATTCAGCAAACTCTAAGGCAACACTTCTCTGACTGTACAGTCATTACCATTGCACACCGAATAACTTCTGTTCTTGACAGTGATATGGTTCTGCTTCTCAATCAAGGACTTATTGAAGAATGTGACTCCCCAACAAGATTGCTAGAGGACAAGTCATCATCTTTTGCCCAACTTGTTACAGAGTATACCATGAGGTCCAAGTCCAGTTTTAAGTAA 4488 0.4066 MSIVFSPHPLMYSATGLLLKPIFLHFLSGSLHLVLLVVFLVSWVWNKIVVGARDGDKDKFKSTLHTKTLFCSLGASAFNLIMCLVNYFYWYRNGWPNENFVTLLDLALKTVAWGVVCSSLHAGYFNSGERRFPFFFRAWCAFFLLISCYSFILDILLYEKHFSLPIPYLISDVVSSFVGLFFCYVGFFVKNEGEDSILREPLLNSNTNVSNASESNKTKGAETVTPYSNAGIFSILTFSWMGPLIAAGNEKTLDIEDVPQLASGYSVVGAFPAFRNKLEADCGTINRVTTLKLVKSLIFSSWKEILLTAVFALLDTLASYVGPYLIDTFVQYLNGQQKFKNEGYLLVTVFFGAKLVECLSQRHWFFKLQQVGIRIRAMLITTIYSKSLTLSCQSKQVHTSGEIINFMTVDAERVGDFSWCMHDLWLVVLQVALALLILYKNLGIASIAAFVATVVVMLANAPLGSLQEKFQDNLMDSKDRRMKATSEILRNMRILKLQGWEMKFLSKIIELRKTEQSWLRKYVYTSAMTTFVFWGAPTFVSVVTFGTCILIGIPFESGKILSALATFRILQEPIYNLPDTISMIAQTKVSLDRIAAFLCLDDLQSDVIEKLPRGSSNTAIKVVEGNFSWDLSSTNTTLKNINLTIFHGMRIAVCGTVGSGKSSLLSCILGEVPKISGTLRVCGAKAYVAQSPWIQSGKIEENILFGEEMDRERYEKVLEACSLKKDLEILSFGDQTIIGERGINLSGGQKQRIQLARALYQDADIYLFDDPFSAVDAHTGSHLFKQCLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQCGKYNDLLNSGTDFMELVGAHKNALSALDLMDGRAESDKLSASEQEVNISSVQGIEEKEANRDMQNGRTDDVAGPKGQLVQEEEREKGRVGFSVYWKYMTTAYGGALVPFILLAQILFQLLQIGSNYWMAWATPISSDVKPAVGSYTLIIVYVALAIGSSFCILARAMLLETAGYKTATLLFNKMHLSIFRAPMSFFDATPSGRILNRVSTDQSVVDINIPSQVGAFAFSMIQLVGIIAVMSQAAWQVFVIFIPVISISIWYQQYYLSSARELSRLVGVCKAPVIQHFAETISGSTTIRSFDQESRFQKTNMKLIDGYSRPTFNIAGAMDWLTFRLDMLSSITFASSLIFLISIPRGVIDPGLAGLAVTYGLNLNMLQAWVIWNLCNMENKIISVERLFQYTCISSEPPLVIEENRPDPSWPTHGEVDIHDLQVRYAPHLPLVLRGITCKFLGGLKTGIVGRTGSGKSTLIQTLFRIIDPTAGKIMIDGVDISSIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYRDEHIWEALDKCQLGDEVRKKEGKLDSAVSENGENWSMGQRQLVCLGRVLLKRSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVLDSDMVLLLNQGLIEECDSPTRLLEDKSSSFAQLVTEYTMRSKSSFK 1495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1940 1495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 620 842 IPR027417 -
Glsi10g1940 1495 FunFam ABC transporter C family member 3 1233 1485 - -
Glsi10g1940 1495 ProSitePatterns ABC transporters family signature. 745 759 IPR017871 GO:0005524|GO:0016887
Glsi10g1940 1495 Pfam ABC transporter 638 772 IPR003439 GO:0005524
Glsi10g1940 1495 MobiDBLite consensus disorder prediction 881 907 - -
Glsi10g1940 1495 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 620 843 IPR003439 GO:0005524
Glsi10g1940 1495 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1252 1484 IPR003439 GO:0005524
Glsi10g1940 1495 CDD ABC_6TM_ABCC_D2 931 1225 IPR044726 GO:0140359
Glsi10g1940 1495 CDD ABC_6TM_ABCC_D1 307 594 IPR044746 GO:0140359
Glsi10g1940 1495 FunFam ABC transporter C family member 10 289 602 - -
Glsi10g1940 1495 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 933 1213 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi10g1940 1495 Pfam ABC transporter transmembrane region 933 1175 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi10g1940 1495 Pfam ABC transporter transmembrane region 306 572 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi10g1940 1495 Pfam ABC transporter 1268 1415 IPR003439 GO:0005524
Glsi10g1940 1495 SMART AAA_5 1276 1461 IPR003593 GO:0016887
Glsi10g1940 1495 SMART AAA_5 647 820 IPR003593 GO:0016887
Glsi10g1940 1495 SUPERFAMILY ABC transporter transmembrane region 295 598 IPR036640 GO:0005524|GO:0016020
Glsi10g1940 1495 Gene3D - 1233 1486 IPR027417 -
Glsi10g1940 1495 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 227 1485 - -
Glsi10g1940 1495 Gene3D ABC transporter type 1, transmembrane domain 285 602 IPR036640 GO:0005524|GO:0016020
Glsi10g1940 1495 Gene3D ABC transporter type 1, transmembrane domain 896 1230 IPR036640 GO:0005524|GO:0016020
Glsi10g1940 1495 SUPERFAMILY ABC transporter transmembrane region 931 1232 IPR036640 GO:0005524|GO:0016020
Glsi10g1940 1495 FunFam ABC transporter C family member 5 895 1231 - -
Glsi10g1940 1495 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 306 586 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi10g1940 1495 CDD ABCC_MRP_domain1 620 820 - -
Glsi10g1940 1495 Gene3D - 603 855 IPR027417 -
Glsi10g1940 1495 FunFam ABC transporter C family member 5 605 852 - -
Glsi10g1940 1495 CDD ABCC_MRP_domain2 1248 1468 - -
Glsi10g1940 1495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1241 1481 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1940 Glsi-ChrGlsi10 13743463 13749376 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1940 626 866 Calmodulin-binding Proteins AT2G36910 29.119 2.03e-23 106