Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1939 ATGGTCTTCTTACACTACCTGCTAATATACTCTGCCACTAGTCTTCTCCTAAAGCCCACTTTCTTATACTTCTTGTCTGGTTCTCTCCACCTTGTTTTGTTAGTGGCGTTTTTAGTCTCATGGGCATGGCAGCAAATTGTGGGTGCTACAGATGGTTCCAAAGAGAAATTCAATAGCACTCTGTATAGAAAGACTATGTTTTGTTCTTTGGGTTTTTCTGGTTTTAATTTTATAATGTGTCTAGTAAATTACTTCTATTGGTATAGAAATGGTTGGTCAAATGAAAATTTTGTGAACCTTTTGGATTTAGCACTAAAAACAGTTGCTTGGGGTATCGTTTGTGCTTACTTGCACACAGGATTCTTTAATCCTGGTGAAAGAAGATTTCCATTTTTCTTCAGAACTTGGTGCGCCTTTTACCTCCTGATTTCCGTTTATTGCTTTATACTGGACATTATTCTCCGTGAAAAACACGTTCCGTCACCAATTCAATACTTGATTTCTGATGTTGTCTCCTCTTTTGTGGCTTTATTCTTCTGTTACGTGGGGTTTTTCGTGAAAAATGAGGGTGAAGATAGCATTCTTCAAGAACCTCTTTTGAATGGTACTACAAATTTTATTAATGCGTCAGAGTCAAATAAGACCAAGGGGGCAGAAACTGTTACCCCTTACTCAAATGCTGGAATTTTCAGCATTCTTACCTTCTCTTGGATGGGTCCTCTGATTGCTGCTGGCAATAAGAAAATTTTAGACATTGAGGATGTTCCGCAACTTGCTAGCAGTGATAGCGTAGTTGGAGCTTTCCCAAGTTTCAAAAATACGCTTGAGGCAGACTGTGGTACAATGAACAGAGTGACCACACTTAAGCTGGTGAAGTCATTAATCTTCTCAACGTGGAAAGAAATTCTATTTACAGCTGTTTGTGCACTTTTATACACATTGGCTTCTTATGTTGGTCCATATCTTATAGACAATTTTGTTCAATACCTTAACGGGCAACGAAAATTTAAGAATGAGGCATATCTTTTGGTGACTGCATTTTTTGTTGCAAAGCTTGTAGAGTGCCTTTCACAGAGGCACTGGTCCTTTAGGTTGCAGCAAGTTGGAATTAGGATCCGATCACTGCTCATGACAATAATCTATAGTAAGGGTTTGACCCTTTCTTGTCAGTCCAAGCAGAGCCACACTACTGGGGAAATAATCAATTACATGACAGTTGATGCTGAAAGAGTTGCTGAATTCAGCGGGTACATGAATGATCTGTGGATAGTAGTTCTGCAAGTTGCATTGGCCTTGTTGGTTTTGTATAAAAATGTTGGGATGGCTTCAATTGCTGCTTTTGTTTCAACTGTTATTGTAATGTTGGCAAATCTTCCCTTGGGATCATTGCAAGAGAATTTTCAAGACAAGTTGATGGAGTCAAAAGATAGAAGAATGAAGGCCATATCTGAGATTTTAAGGAACATGAGAATCCTCAAACTACAGGGATGGGAAATGAAGTTTCTGTCTAAGATTATTGAACTGAGGAAGACTGAGCAAGGCTGGTTAAAGAAATATGTTTATACTTTAGCCACGACTGTATTTGTCTTTTTTGGTGCACCCACATTTGTGTCTGTGGTTACTTTTGGTACTTGTATACTTTTAGGGATCCCACTTGAATCAGGAAAGATCTTAGCTGCACTCGCAACATTCCGAATACTTCAGGAGCCCATTTATAATCTTCCAGACACGATCTCAATGATAGCACAAACTAAGGTTTCCCTTGATAGGATTGCTTCATTCCTTCGTCTTAATGACTTGCAGTCTGATGTTATAGAGAAGCTTCCAAGGGGTAGTTCTAATACAGCAATCAAAGTAGTTGATGGAAATTTCTCTTGGGACTTATCTTCCCCTAATACAAATTTGAAACATATAAATCTCACAATCTTTCATGGCATGAGAGTTGCTGTTTGTGGTACTGTTGGGTCAGGAAAGTCTAATTTATTATCTTGTATTTTGGGAGAAGTGCCAAGGATATCAGGAACGCTGAGGGTGTGTGGAACAAAGGCCTATGTTGCTCAGTCTCCTTGGATACAAAGTGGGAAGATAGAAGAGAATATACTGTTTGGTAAGGAGATGGATAGGGAAAGGTATGAGAAGGTGCTTGAAGCAAGCTCCCTGAAGAAGGACTTGGAGATTTTGCCATTTGGAGATCAAACAATTATAGGCGAGAGGGGAATCAATTTGAGTGGTGGACAGAAACAGAGAATACAACTCGCACGTGCTCTTTACCATGATGCTGATATCTATCTGTTTGATGATCCTTTTAGTGCTGTTGATGCTCATACAGGATCCCACCTCTTTAAGGAATGTTTATTGGGCCTTTTAAGTTCAAAGACTGTTATTTATGTCACTCATCAAGTAGAGTTCTTACCTGCTGCTGACCTTATCTTGGTCATGAAAGATGGGGAAATTACTCAACGTGGAAAGTATAAAGATTTGCTCAACTCGGGGACTGATTTTACGGAACTTGTTGGTGCACATAAAAAAGCCTTGTCTGCACTCAATTCATTGGATGGAGGGGGAGTATCTGATAAAGTAAGCACCTCAGAACAAGAAGCAAATATCTCTGGTGCTCAATGTATAGAAGAAAAAGATGCAAACAAAGATATGCAAAATGGTAAAACAGAAGATGTAGTTGGACCACAAGGCCAGCTTATTCAAGAGGAAGAAAGGGAGAAAGGTAAAGTTGGGTTTTCAGTCTATTGGAAATATATGACAACAGCATATGGAGGAGCTCTTGTTCCATTTATATTGTTGGCCCAAATTCTGTTTCAACTTCTTCAAATTGGAAGCAACTATTGGATGGCCTGGGCAACTCCCATTTCTTCAGACTTGAAACCTGCTGTTGGAGCCTATACACTTATAATTGTGTATGTTGCTTTGGCCATCGGAAGTTCCTTCTTCCTCCTTGCCAGAACAATGCTTCTTGCCACAGCTGGTTATAAGACTGCTACGCTACTCTTCAATAAAATGCACTTAAGCATTTTCAGTGCGCCTATGTCATTTTTTGATGCCACTCCAAGTGGACGAATCCTCAATAGAGTTTCTACGGACCAAAGTTTAGTGGATATGGACATTCCTTATCAACTTGGGTCATTTGCCTTCCTTATGATCCAGCTTCTGGGAATTATAGCGGTGATGTCTCAGGCTGCATGGCAGGTTTTCATCCTCTTTATACCAGCGATATCAATTAGCCTTTGGTATCAGCAATATTATTTACCATCAGCTCGAGAACTATCACGGTTAGTTGGTGTATGCAAAGCTCCAGTCATTCAACACTTTGCTGAAACAATTTCAGGAACAACAACAATCAGGAGCTTTGATAAAGAGTCAAGATTTCAGGAAATAAATATGAAACTGATGGATGAGTATTCTCGGCCCAAGTTCAATATTGCTGGTGCTATGGAATGGTTGTGCTTCCACTTGAACATATTGTCTTCTATCACATTTGCCTCTTCTTTGATATTCTTGATATCTATTCCACAGGGAGTCATAGATCCAGGCATTGCTGGTTTAGCTGTTACATACGGACTTAATCTGAACATGTTACAAGCTTGGGTGATAATGAGACTTTGCAAGATGGAGAACAAAATTGTATCAGTAGAAAGGATACTGCAGTACTCTGGCATTCTAAGTGAGCCTCCTCTTGTATTAGAAGAAAACCGACCAGCTCCTTCTTGGCCGTCACATGGAGAAGTAAATATTCATGATTTGCAGGTTCGCTATGCCCCACATCTGCCTCTTGTGTTGCGTGGCATCACTTGCAAATTTCCCGGAGCACTGAAAACTGGCATTGTTGGGAGAACAGGAAGTGGTAAATCGACTCTCATACAAACACTTTTCCGAATTGTTGATCCTACTGCTGGGAAAATTATGATTGATGGCATCGACATTTCTTCAATTGGACTTCATGATTTGAGGTCTAGACTCAGTATTATTCCTCAGGATCCAACCATGTTTGAAGGGACAGTAAGAAGTAATCTGGATCCACTGGAAGAGTATACAGATGAACAGATTTGGGAGGTTCTGGATATGTGTCAACTGGGAGATGAAGTTAGAAAGAAAGAAGGAAAGCTAGACTCTGGCGTTTGTGAGAATGGTGAGAATTGGAGTATGGGTCAGAGACAGCTAGTGTGCCTTGGGAGGGTGCTACTTAAGAAAAGTAAGGTGTTGGTGCTTGATGAAGCTACTGCATCAGTTGATACTGCCACAGATAATTTGATTCAGCAAACTCTTAGGCAACACTTCTCTGACTGTACAGTCATCACCATTGCACACCGAATAACTTCTGTTCTTGACAGTGATATGGTTCTGCTTCTCAATCAAGGACTCATTGAGGAGTGTGACTCTCCAACAAGATTGCTAGAGGACAAGTCATCATCTTTTGCCCTACTTGTTGCAGAGTATACCATGAGGTCCAAGTCCAGTTTTGAGTGA 4479 0.4019 MVFLHYLLIYSATSLLLKPTFLYFLSGSLHLVLLVAFLVSWAWQQIVGATDGSKEKFNSTLYRKTMFCSLGFSGFNFIMCLVNYFYWYRNGWSNENFVNLLDLALKTVAWGIVCAYLHTGFFNPGERRFPFFFRTWCAFYLLISVYCFILDIILREKHVPSPIQYLISDVVSSFVALFFCYVGFFVKNEGEDSILQEPLLNGTTNFINASESNKTKGAETVTPYSNAGIFSILTFSWMGPLIAAGNKKILDIEDVPQLASSDSVVGAFPSFKNTLEADCGTMNRVTTLKLVKSLIFSTWKEILFTAVCALLYTLASYVGPYLIDNFVQYLNGQRKFKNEAYLLVTAFFVAKLVECLSQRHWSFRLQQVGIRIRSLLMTIIYSKGLTLSCQSKQSHTTGEIINYMTVDAERVAEFSGYMNDLWIVVLQVALALLVLYKNVGMASIAAFVSTVIVMLANLPLGSLQENFQDKLMESKDRRMKAISEILRNMRILKLQGWEMKFLSKIIELRKTEQGWLKKYVYTLATTVFVFFGAPTFVSVVTFGTCILLGIPLESGKILAALATFRILQEPIYNLPDTISMIAQTKVSLDRIASFLRLNDLQSDVIEKLPRGSSNTAIKVVDGNFSWDLSSPNTNLKHINLTIFHGMRVAVCGTVGSGKSNLLSCILGEVPRISGTLRVCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYEKVLEASSLKKDLEILPFGDQTIIGERGINLSGGQKQRIQLARALYHDADIYLFDDPFSAVDAHTGSHLFKECLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGEITQRGKYKDLLNSGTDFTELVGAHKKALSALNSLDGGGVSDKVSTSEQEANISGAQCIEEKDANKDMQNGKTEDVVGPQGQLIQEEEREKGKVGFSVYWKYMTTAYGGALVPFILLAQILFQLLQIGSNYWMAWATPISSDLKPAVGAYTLIIVYVALAIGSSFFLLARTMLLATAGYKTATLLFNKMHLSIFSAPMSFFDATPSGRILNRVSTDQSLVDMDIPYQLGSFAFLMIQLLGIIAVMSQAAWQVFILFIPAISISLWYQQYYLPSARELSRLVGVCKAPVIQHFAETISGTTTIRSFDKESRFQEINMKLMDEYSRPKFNIAGAMEWLCFHLNILSSITFASSLIFLISIPQGVIDPGIAGLAVTYGLNLNMLQAWVIMRLCKMENKIVSVERILQYSGILSEPPLVLEENRPAPSWPSHGEVNIHDLQVRYAPHLPLVLRGITCKFPGALKTGIVGRTGSGKSTLIQTLFRIVDPTAGKIMIDGIDISSIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEVLDMCQLGDEVRKKEGKLDSGVCENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVLDSDMVLLLNQGLIEECDSPTRLLEDKSSSFALLVAEYTMRSKSSFE 1492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1939 1492 FunFam ABC transporter C family member 5 602 849 - -
Glsi10g1939 1492 FunFam ABC transporter C family member 10 286 599 - -
Glsi10g1939 1492 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 303 583 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi10g1939 1492 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 617 840 IPR003439 GO:0005524
Glsi10g1939 1492 Gene3D - 1230 1482 IPR027417 -
Glsi10g1939 1492 SMART AAA_5 1273 1458 IPR003593 GO:0016887
Glsi10g1939 1492 SMART AAA_5 644 817 IPR003593 GO:0016887
Glsi10g1939 1492 Gene3D ABC transporter type 1, transmembrane domain 893 1227 IPR036640 GO:0005524|GO:0016020
Glsi10g1939 1492 Gene3D ABC transporter type 1, transmembrane domain 281 596 IPR036640 GO:0005524|GO:0016020
Glsi10g1939 1492 SUPERFAMILY ABC transporter transmembrane region 928 1229 IPR036640 GO:0005524|GO:0016020
Glsi10g1939 1492 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 930 1210 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi10g1939 1492 CDD ABC_6TM_ABCC_D2 928 1222 IPR044726 GO:0140359
Glsi10g1939 1492 Pfam ABC transporter transmembrane region 930 1173 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi10g1939 1492 Pfam ABC transporter transmembrane region 303 570 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi10g1939 1492 Pfam ABC transporter 635 769 IPR003439 GO:0005524
Glsi10g1939 1492 Pfam ABC transporter 1265 1412 IPR003439 GO:0005524
Glsi10g1939 1492 CDD ABCC_MRP_domain2 1245 1465 - -
Glsi10g1939 1492 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 224 1480 - -
Glsi10g1939 1492 Gene3D - 597 850 IPR027417 -
Glsi10g1939 1492 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1249 1481 IPR003439 GO:0005524
Glsi10g1939 1492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1237 1473 IPR027417 -
Glsi10g1939 1492 CDD ABC_6TM_ABCC_D1 304 591 IPR044746 GO:0140359
Glsi10g1939 1492 FunFam ABC transporter C family member 5 893 1228 - -
Glsi10g1939 1492 SUPERFAMILY ABC transporter transmembrane region 293 591 IPR036640 GO:0005524|GO:0016020
Glsi10g1939 1492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 614 839 IPR027417 -
Glsi10g1939 1492 ProSitePatterns ABC transporters family signature. 742 756 IPR017871 GO:0005524|GO:0016887
Glsi10g1939 1492 CDD ABCC_MRP_domain1 617 817 - -
Glsi10g1939 1492 FunFam ABC transporter C family member 3 1230 1482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1939 Glsi-ChrGlsi10 13733141 13738898 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1939 623 846 Calmodulin-binding Proteins AT2G36910 30.204 8.62e-23 104