Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1923 ATGAACCCCACAAGCTTCATATTTGAGTTTCTGGTTGACTCTGACTTTATAAGCCAACATCAACCCACAAGCTTCGTGTTCTCTGAGTGGCAGAGAATGAAGATGAAGATGATGATAATGGGGTTATCAGCATCTAGAGTTTTAGTTTTGTTTGCTTTGGTTTCCTTGGTGGGGCTTCAAGTGGGTTTAGCAGTAGATGCAGGTGGCGATGATAATGGCCATGTCAGGAATTACATTAGCTGGGATGATTTGACAGTGGATGAGCATGGATTAACCTTAAACTCCAACAACTATGTTCAAGTAATTGTGGTTGACCAGCATGGTCAGGGACTTTCGACAACTGTCCAAGGAGCCGTAGACATGGTGCCAGATAACAACAGAGAAAGGGTGAAAATATACATTTATCCTGGAATTTACAGAGAAAAGGTGTTTGTGCCAAGGACCAAGCCATATATCTCCTTCATAGGGAAAAAAAATCAAACAGCTGGTGTGGTGATTACCTGGAACAGCAAGTCATCGGACATGGGCTCAAATGGCCAAGCTTTGGGCACCTATGGTTCTGCAACCGTAGGAGTAGAATCTGATTATTTCTGTGCAACTGGGATCACTTTTGAGAACTCTGTAGTTGCAGTGCCTGGTGGACATGGAATGCAAGGAGTAGCACTGAGGGTAGACAGTAACAGAGCCATGTTCTATAAAGTTCAAATCTTGGGAACACAGGATACACTCTTGGATAACATAGGAAGCCATTACTTCTTAAAGTGTTACATCCAAGGAAAAATTGATTTTGTTTTTGGCAGTGCAAAATCACTCTATGAGGATTGTCGTCTCCAATCAACATCTGAGAACCATGGAGCAATAGCAGCTCATCATAGAGATTCCCTAAATGAAGATACAGGGTTTTCTTTTGTAGGCTGCTCCATCCAAGGATCTGGTAGGGTCTACCTTGGAAGAGCTTGGGGCGAGTATTCAAGAATAATATATTCAAATTGTTATATGGACGATATTATTATCCCCGAAGGATGGACTGAATGGAATCACCCATCTAGAAAGATGACTGCGGTTTTTGGGGAGTACCAGTGCCAAGGAAGGGGAGCAGATAGAACTGGTAGGGTACCATGGTCAAAATCTTTAAGCTATGAGGAAGCGAGGCCTTTCCTCGGCAAGAACTTCATAAATGGAGACCAGTGGCTTAGACTATAG 1203 0.4289 MNPTSFIFEFLVDSDFISQHQPTSFVFSEWQRMKMKMMIMGLSASRVLVLFALVSLVGLQVGLAVDAGGDDNGHVRNYISWDDLTVDEHGLTLNSNNYVQVIVVDQHGQGLSTTVQGAVDMVPDNNRERVKIYIYPGIYREKVFVPRTKPYISFIGKKNQTAGVVITWNSKSSDMGSNGQALGTYGSATVGVESDYFCATGITFENSVVAVPGGHGMQGVALRVDSNRAMFYKVQILGTQDTLLDNIGSHYFLKCYIQGKIDFVFGSAKSLYEDCRLQSTSENHGAIAAHHRDSLNEDTGFSFVGCSIQGSGRVYLGRAWGEYSRIIYSNCYMDDIIIPEGWTEWNHPSRKMTAVFGEYQCQGRGADRTGRVPWSKSLSYEEARPFLGKNFINGDQWLRL 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1923 400 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 94 399 - -
Glsi10g1923 400 FunFam Pectinesterase 97 400 - -
Glsi10g1923 400 Gene3D - 95 400 IPR012334 -
Glsi10g1923 400 Pfam Pectinesterase 102 395 IPR000070 GO:0030599|GO:0042545
Glsi10g1923 400 SUPERFAMILY Pectin lyase-like 101 398 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1923 Glsi-ChrGlsi10 13425826 13428070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1923 33 351 Carbohydrate Esterase AT5G55590 53.687 5.28e-130 375