Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1910 ATGGCTGAGGAAGAATCAGTGAATGATGTTTTTGAGACTGACTCAAATGGCCACCACATGCCTGAGAAAGCTTTAGATGACATGACTGAAAAGAAGGTCTTGGAAGCTGATGGAGGAAAAGTATTTGAAAATGGAGTCAAAGACCCAAAAAAGGATGATTTAAAGGAAATGGCAGAGGATAAGAAAGTTGGTGTACAAGTGATGGAAGTGGACAAGAAAGATGATGGTGTAAACAAAAGAGAAGAGGATAATAAAGATGATGTTGTAAAAGAAATAGAAGAAAATAAGAAAGTTTATGTTGTAAAAGAAATAGGAGAGGATAAGAAAGATGATGTTGTAAAAGAAATGGAGGAAGATAAGAAAGGTTATGTTGTAAAAGAAACTGAAGAGTATAAGAAGGATGGTGTTGTAAAAGAAATAGAAGAGGATAAGAAAGATGATAATGGATCTGGGATTAAAAAAATGGATGAAGAGATAGAAATTAAGGAAACTGAGGACAGTAAAGAAGAAAAAGAGCAAAAAGAAGCCGAGGAGCCAGAAGTGGATGCTATGGAAGAAGATGGTACTCCTAATGACAAAGAGGGGAGTGGTGAAAAGGAAAAAGTTGAAGAAGGAGATGAAGAGGGGGATGAAGGTAATGATGATGGGCCACAAGAAGAAGAAAAAGCAGAAGAGAGAAAGGCTGATAAAAGATTGAAAAAGCGCGGAAAAGCAAAGATCAATGGGGAGAGAGTGAAAGAGAAAAGTAAGGTATTGAAGGAGACGGGGCCAAGGACTCCGGCTATTGATCGCCCTGTACGGGAAAGGAAATCAGTTGAGAGGTTTGTAGCATCAATGGAAAAGGATGCAGCTAAAGAATTTCAAATTGAAAAGGGTCGTGGTACACCTTTAAAAGATATACCCAATGTGGCTTATAAATTATCTAGAAGGAAAACTGATGATACCTTCCGATTGCTTCATACCATTCTCTTTGGAAGGAGAGGGAAGGCGGTTCAGATTAAGAGTAATATATTAAGGTTTTCTGGCTTTGTGTGGCATGAAAATGAGGAAAAGCAAAAGACTAAATTAAGAGAAAAATTTGACAAGTGTAATAAGGAGAAGTTATTGGAATTCTGTGATGTACTTGACATACCAATGACAAAGACAACTACCAGGAAGGAAGATATTGTTACAAAGCTGATAGACTTTTTGATGGCTCCTCATGCGACAACAACTGTGCTACTTGCAGAGAAAGAGTCAAATAAAAGCAAAAAGCGCAAGCGGGTCACAAAAAGAGGTTCATCAACATCTGGAATCAGAACTTCAAAATGTTCTACTAAGAGTCAAAATAAAATAGAAGATTCTTCAGCAGTGGAGGAGAGAAAGAGTGCAACTGAAACAGAAGATGAGTTAGGGGAAGAAGAAAAAGAAGACAAAGAAGATGAGGAGAATGACAATGATGTTTCTGGTAAATCTGAGGATGAGATGCCAGAACAGTCTGAAAGCGAGGGCAAAAGTGATTCTGGAAATGAATCTGAAGATGTGGAGACAACAAGAAAAAAATCTAAATTGTCCACAAAGAAAGAATCAGCTGCAAAAACTAAAACCAAGAAAATTACAGTCACAAATAAATCTCGCTCACCATCAAAGAGAACACCTAAGAAATCATCATCTACCCATCCCAAGGTTGATGATAATGATGGAAACCCAAAGGTCTTTTCAAGGAAGAAGAAAAATGAAAAAGAAGGAAAGCAAAAGGCCTCAACTCTAACTAAGTCTTCCTCGAAAGAGAAAACTGAAAAGGTTGGCAATGGGAAGGGGAAGAACAAAGAGAAGTTGAACCCCAGTGATGATCAGTTGCAAGATGCAATATGTGAAATTCTTAAAGTAGTTGACTTTAATACGGCTACATTTACTGACATCCTTAAGCAACTTGCGAGGCAATTTGATGTGGATCTCACCCCAAGAAAGGCATCTATAAAGCTCATGATTCAGGAAGAGTTGACAAAACTAGCTGATGAAGCAGATGATGAAGATGATGAAGCGGATGCTGAGAAAGATGAAACCGACTCTGCAGGGCAGGAGGATGCAAAACTGAAACCCATGTCTTTTCTGGCCTGCGTTAGTCTTTCTGTAGTCTATGCTGTTACAATACCTGTCATTGCGGGCAGTTTTAGATTGGGTTTTACTTTGACCCTTGGATATATGTTTGGCTTCTTCAGTAAAGATTGTTTGCTCGACATGTTGATAGTGGAAGAACACAAGGAATCATCTCATTCGCTCCCAAACCACTTCTTCTCCTTCCTCCCCCCCCGCCGGAGACACCGTCGCTCGCCGGCTGATCATCTCCAACGCGCCCACCAACCGTCCTTCTCCCTTTCATCATCTCCAAAAAGCGTTGAGTCGTCGATGGCGGACTCGGACAACGATTCCGGAGGAGCGCAGAACACAGGGAACAATGCGAACAGCAGCGAATTATCGCTGCGAGAGCAAGACCGGTTCCTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCTCTGCCGGCGAATGCGAAGATCTCAAAGGACGCGAAGGAGACAGTGCAAGAGTGCGTATCGGAGTTCATCAGCTTCATCACCGGGGAGGCTTCGGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAATGGCGACGATTTGCTATGGGCTATGACGACGTTGGGGTTCGAGGACTACGTGGAGCCGCTGAAGATATACCTGCAGAGATTTAGGGAAATGGAAGGGGAGAAGAGCGTGGCGGCGCGTGACAAGGAAGGGGTTGGAGGTGTGAACGCTGCAAATAGCGGGTTCGAGGGAGGAGGTGGTGGGGTGTATGGGGGAGGAGGAGGTGGAATGGGGATGATGATGCATCAGGGACACGTGTACAGTTCTGGTGGGTTCCATCCAATGGCTGTGAGCGGAGGAGGTAGTGGTGGTTCTGTGATGGGTAAGAGTGGGCCCAGTTATCCTGGTGCTGGATCTAATGCAGGTAGGCCCAGATAG 3003 0.4296 MAEEESVNDVFETDSNGHHMPEKALDDMTEKKVLEADGGKVFENGVKDPKKDDLKEMAEDKKVGVQVMEVDKKDDGVNKREEDNKDDVVKEIEENKKVYVVKEIGEDKKDDVVKEMEEDKKGYVVKETEEYKKDGVVKEIEEDKKDDNGSGIKKMDEEIEIKETEDSKEEKEQKEAEEPEVDAMEEDGTPNDKEGSGEKEKVEEGDEEGDEGNDDGPQEEEKAEERKADKRLKKRGKAKINGERVKEKSKVLKETGPRTPAIDRPVRERKSVERFVASMEKDAAKEFQIEKGRGTPLKDIPNVAYKLSRRKTDDTFRLLHTILFGRRGKAVQIKSNILRFSGFVWHENEEKQKTKLREKFDKCNKEKLLEFCDVLDIPMTKTTTRKEDIVTKLIDFLMAPHATTTVLLAEKESNKSKKRKRVTKRGSSTSGIRTSKCSTKSQNKIEDSSAVEERKSATETEDELGEEEKEDKEDEENDNDVSGKSEDEMPEQSESEGKSDSGNESEDVETTRKKSKLSTKKESAAKTKTKKITVTNKSRSPSKRTPKKSSSTHPKVDDNDGNPKVFSRKKKNEKEGKQKASTLTKSSSKEKTEKVGNGKGKNKEKLNPSDDQLQDAICEILKVVDFNTATFTDILKQLARQFDVDLTPRKASIKLMIQEELTKLADEADDEDDEADAEKDETDSAGQEDAKLKPMSFLACVSLSVVYAVTIPVIAGSFRLGFTLTLGYMFGFFSKDCLLDMLIVEEHKESSHSLPNHFFSFLPPRRRHRRSPADHLQRAHQPSFSLSSSPKSVESSMADSDNDSGGAQNTGNNANSSELSLREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQRFREMEGEKSVAARDKEGVGGVNAANSGFEGGGGGVYGGGGGGMGMMMHQGHVYSSGGFHPMAVSGGGSGGSVMGKSGPSYPGAGSNAGRPR 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1910 1000 MobiDBLite consensus disorder prediction 186 202 - -
Glsi10g1910 1000 MobiDBLite consensus disorder prediction 127 262 - -
Glsi10g1910 1000 ProSitePatterns NF-YB/HAP3 subunit signature. 858 874 IPR003956 GO:0005634|GO:0006355|GO:0043565
Glsi10g1910 1000 MobiDBLite consensus disorder prediction 427 445 - -
Glsi10g1910 1000 FunFam DEK domain-containing chromatin associated protein 599 663 - -
Glsi10g1910 1000 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 607 662 IPR014876 -
Glsi10g1910 1000 Coils Coil 346 366 - -
Glsi10g1910 1000 PRINTS CCAAT-binding transcription factor subunit A signature 855 873 - -
Glsi10g1910 1000 PRINTS CCAAT-binding transcription factor subunit A signature 874 892 - -
Glsi10g1910 1000 PRINTS CCAAT-binding transcription factor subunit A signature 893 911 - -
Glsi10g1910 1000 PANTHER DEK PROTEIN 137 679 IPR044198 GO:0003677|GO:0006325
Glsi10g1910 1000 MobiDBLite consensus disorder prediction 203 218 - -
Glsi10g1910 1000 FunFam Nuclear transcription factor Y subunit B-3 816 937 - -
Glsi10g1910 1000 MobiDBLite consensus disorder prediction 11 25 - -
Glsi10g1910 1000 MobiDBLite consensus disorder prediction 240 254 - -
Glsi10g1910 1000 Gene3D - 599 663 - -
Glsi10g1910 1000 MobiDBLite consensus disorder prediction 127 178 - -
Glsi10g1910 1000 MobiDBLite consensus disorder prediction 409 609 - -
Glsi10g1910 1000 MobiDBLite consensus disorder prediction 550 609 - -
Glsi10g1910 1000 Coils Coil 450 477 - -
Glsi10g1910 1000 Coils Coil 152 174 - -
Glsi10g1910 1000 MobiDBLite consensus disorder prediction 483 528 - -
Glsi10g1910 1000 MobiDBLite consensus disorder prediction 463 482 - -
Glsi10g1910 1000 Coils Coil 661 681 - -
Glsi10g1910 1000 MobiDBLite consensus disorder prediction 665 688 - -
Glsi10g1910 1000 MobiDBLite consensus disorder prediction 665 683 - -
Glsi10g1910 1000 Pfam DEK C terminal domain 608 661 IPR014876 -
Glsi10g1910 1000 MobiDBLite consensus disorder prediction 778 819 - -
Glsi10g1910 1000 Gene3D Histone, subunit A 815 934 IPR009072 GO:0046982
Glsi10g1910 1000 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 827 891 IPR003958 -
Glsi10g1910 1000 SUPERFAMILY Histone-fold 824 927 IPR009072 GO:0046982
Glsi10g1910 1000 MobiDBLite consensus disorder prediction 446 462 - -
Glsi10g1910 1000 MobiDBLite consensus disorder prediction 976 1000 - -
Glsi10g1910 1000 MobiDBLite consensus disorder prediction 1 25 - -
Glsi10g1910 1000 SUPERFAMILY DEK C-terminal domain 603 661 - -
Glsi10g1910 1000 MobiDBLite consensus disorder prediction 765 819 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1910 Glsi-ChrGlsi10 13339574 13354339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1910 797 921 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.800 1.64e-67 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Glsi10g1910 CBFD_NFYB_HMF 2.2e-26 CL0012