Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1907 ATGGACGAAGGGGAGGGAGGGGATCAGATGGATCAGTTCCATCGCAACGAAGCGATATCAGCAGTTGCGGATGATGGTTTCTTGGCTGAGGAGGACGATGATTACGAGGACCTTTACAACGATGTTAATGTTGGGGAAGGGTTTCTTCAATCCTTGAGGAAGAACGAGGATTTAGGGTTTAGGAATGAGGAGGCCGAGGAGAAAAAAACCCAAACAACCGTCGTGCCACCAGAGACAGCTGGGGTTTCGGTACCTGGTGGCGGTGGTGGAGGTGGGGTTATGGATGGTGCATCCAGGGTTTTCGGGAGAGCAGATGGGTTTCAAAATCAGGGTTTTAGAGGGAATGAGATGGGTGTCAAAGGGAGTGGTGGATCGGGGTCATCTGTGGGCGTTGGAGGTGGGATCAGGGTTGAATTAGGGCAGCCATCAGGTAAATTGAACGAGATGGAAGAGCAAAGTGCTAATAATAGCGTAGGAGTACAAGGGACGGGGCAGCAGCAACCACATGGTGTAGTTGTTGGGAATATGGGGAGTGTTGGAAGTGAGGGGTTGGTGAGAGAAGGGGTAGGAGGAAATCTTAATAGAATTGGTGGGAATGGGGTTGGTAATAGCATCAGCGGTGTCAATAGTGTTAATACTGGAGGAGCAGCTGGTGTGGGTGGGGGCGGTGCTGCTGGTGGTGGTGGTGGTGGGGGTACTATATTATTTGTGGGTGATTTGCACTGGTGGACTACGGATTCTGAGCTGGAGGTAGAACTTTGTAAGTATGGGCCTGTGAAGGAGGTGAAGTTTTTTGATGAGAAGGCAAGTGGGAAGTCAAAAGGGTATTGCCAAGTTGAATTTTATGACCCTTCTGCTGCCTCTGCTTGTAAGGAAGGGATGAATGGGTATATGTTTAATGGACGACCTTGTGTTGTTGCTTTTGCATCACCTTATACTGTTAAGAGAATGGGAGAGGCTCAAGTGAATAGGAATCAACAGATGGCCCAATCTTCAGTCACTCAGACAAGGAGAGGGCCTGCTGATGCAGGTGCTAAGACTGGGGGGAGTAATATTGCAACAGGTGGTAACTACCAAGGTGGTGATAACAATAGAGGTTATGGGAGAGGTAACTGGGGGAGAGGGAATAACCCTGGGATGGGAAATAGGGGGCCTGTTAATCCAATGAGGAATAGGGGTGGTGGGATGGGGGGTAGAGGTATTATGGGCAATGGCGGGAATGGATTTGGACAGGGTATTGGTGCTACCCCACCTTTATTGCATCATCAGTCAATGATGAATCAAGGTTTTGATCCTGCATTTGGTGCTCCTATGGGTAGAATGGGTACCTTTGGAGGCTTTCCTGGTGCTCCAGCAGCTCCATTCTCTGGGATCTTACCTTCATTTCCTCCTGTTGGAGGTGTTGGTTTGCCTGGAGTAGCGCCTCATGTTAATCCAGCCTTTTTTGGGAGAGGGATGCCTGTTAATGGTATGGGGATGATGCCCACATCAGGCGTTGATGGGCCTAATATGGGAATGTGGTCAGATCCAAGTATGGGTGGATGGGGTGGTGAAGAGCATGGTGGTGGGAGAGCTGGAGAGTCAAGTTATGGGGAGGAAGCTGCATCAGACCATCAGTATGGTGAGGTGAGTCACGATAGAGGTGGGTGGCCTAATTCCATGAGAGAGAAAGATAGAGGATCAGAGAGGGACTGGTCTGGTTCTTCTGAAAGAAGGTACAGGGATGATAGAGAACAAGGATATGAGAGAGATGTGCCAAGAGAAAAAGAAGTTGGCCAAGACCATGAATGGTCAGAAAGAAGGCATCGTGATGATAGAGAAATGGTCCGAGAACTAGATAGGGAGCGTGACCGTGATCGGGAACGGTCTCGAGATCGTGATCGTGACCGTGAAAGGGACCGCGATCGAGATCGTGACCGTGATAGGTACAGGGAAGACAGGGACAGATATGCAGATCATAATAGGTACAGAGACCGCGAAGCAGACCACGAGGATGAGTGGGAACGGGGACGGTCATCAAGGACTCACAGCAAATCAAGATTACCACAAGAAGAGGATCATCATTCTAGATCAAGGGAGGTTGACTATGGAAAGAGGAGAAGGCCTACCTCTGAGTAA 2118 0.4958 MDEGEGGDQMDQFHRNEAISAVADDGFLAEEDDDYEDLYNDVNVGEGFLQSLRKNEDLGFRNEEAEEKKTQTTVVPPETAGVSVPGGGGGGGVMDGASRVFGRADGFQNQGFRGNEMGVKGSGGSGSSVGVGGGIRVELGQPSGKLNEMEEQSANNSVGVQGTGQQQPHGVVVGNMGSVGSEGLVREGVGGNLNRIGGNGVGNSISGVNSVNTGGAAGVGGGGAAGGGGGGGTILFVGDLHWWTTDSELEVELCKYGPVKEVKFFDEKASGKSKGYCQVEFYDPSAASACKEGMNGYMFNGRPCVVAFASPYTVKRMGEAQVNRNQQMAQSSVTQTRRGPADAGAKTGGSNIATGGNYQGGDNNRGYGRGNWGRGNNPGMGNRGPVNPMRNRGGGMGGRGIMGNGGNGFGQGIGATPPLLHHQSMMNQGFDPAFGAPMGRMGTFGGFPGAPAAPFSGILPSFPPVGGVGLPGVAPHVNPAFFGRGMPVNGMGMMPTSGVDGPNMGMWSDPSMGGWGGEEHGGGRAGESSYGEEAASDHQYGEVSHDRGGWPNSMREKDRGSERDWSGSSERRYRDDREQGYERDVPREKEVGQDHEWSERRHRDDREMVRELDRERDRDRERSRDRDRDRERDRDRDRDRDRYREDRDRYADHNRYRDREADHEDEWERGRSSRTHSKSRLPQEEDHHSRSREVDYGKRRRPTSE 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1907 705 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 15 644 IPR034772 -
Glsi10g1907 705 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 304 IPR000504 GO:0003723
Glsi10g1907 705 MobiDBLite consensus disorder prediction 323 338 - -
Glsi10g1907 705 Gene3D - 229 348 IPR012677 -
Glsi10g1907 705 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 233 311 IPR000504 GO:0003723
Glsi10g1907 705 MobiDBLite consensus disorder prediction 323 415 - -
Glsi10g1907 705 SUPERFAMILY RNA-binding domain, RBD 231 319 IPR035979 GO:0003676
Glsi10g1907 705 CDD RRM_CFIm68_CFIm59 235 308 - -
Glsi10g1907 705 SMART rrm1_1 234 307 IPR000504 GO:0003723
Glsi10g1907 705 MobiDBLite consensus disorder prediction 61 89 - -
Glsi10g1907 705 MobiDBLite consensus disorder prediction 538 705 - -
Glsi10g1907 705 MobiDBLite consensus disorder prediction 500 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1907 Glsi-ChrGlsi10 13333981 13336098 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1907 214 309 Eukaryotic Initiation Factors Gene Family AT4G34110 31.000 5.84e-06 47.8