Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1900 ATGTGTTCAAGGAGGAGTTTTCTCTTCTTTTTCTTAGCACTCTCGGGCTTCTTGGACCCTACTGTGCTTGCAGAAAAGGTTACTTTCGAATTCCCTTCTTTCACTCTTCGGAATATCACTCTTCTGGGCGATTCTTATCTCAGGAATGGCGTCATTGGTCTCACCAGAGCCACCGACGTGCCCACTTCTAGCTCAGGAGCCATGGTTTATGACAACCCCATATCTCTCTACGACCCAGAAACAAACATCACGGCTTCATTCTCCACAAGATTCGCATTCTCCATCAATAATTTGAATCCTAGCTCGTTCGGTGATGGGTTGGCGTTTTTTCTATCTCCAAGCAACCAGACTCTCGGGAGCCCAGGTGGGTATCTGGGTCTTGTTAATTCTTCCGAATTGACCAGAAACAAGTTTGTGGCGATTGAATTTGATACTCGGCTCGATTTGGATTTCAATGACCCGAATGAGAATCATGTTGGATTGGATATAGACGGTGTGAATTCGATCAAGACTGAAGATTTGATCTTGCAGGGGATTGATCTCAAGAATGAGAGTTTGATCACGGCTTGGATTGATTACAAGAGTGAGCAGAGGAAGCTAAATGTTTTCTTGAGCTATTCGAGTTTCAAGCCTGAAAAGCCGATTCTGAGTGTTGATATTGACCTTTCTATATATTTCAAGGAGATAATGTATGTGGGGTTTTCAGCTTCTACTGAGGGAAGCACTGAGCTTCATCAGATTGAGAATTGGAGCTTTGAGACTAATGTGTTTCTTCCCGCAAGATCAAAGTTACATCCTCACAACGTTTCTGATAGCTTGGTGACTGTATCTGTGGACATTCCTAGATCCAATTCCAGCAAGAAGCGTGACAAAAGGCTTGGAGTAGGCATTGCCATTGCCGGTCCAGCATTCTTCTGTGTAATTTTGTCTATTTTCGGCTATATTTCTGTTCGGAAATGGAGGGGTATCAGAAGACAGAAGAGCTTGAAATCAGAGTTTGTGGCGTGTCCAAGGGAATTTAATTACAAAGAGTTGAAATCAGCCACAAAAGGGTTTCATTCCAGTAGGATCATAGGCCAAGGATCATTTGGGACAGTTTACAAAGCTTTCTTTATATATTCAGGAACCATTGCTGCTGTGAAGAGGTCAAGACACTCACATCAAGGTAAAACAGAATTCCTATCTGAACTTTCCATTATAGCTGGTTTGAGGCATAAGAATTTGGTTCAGCTTCAAGGCTGGTGTGTTGAGAAGGGCGAATTGCTGCTTGTGTATGACTTTATGCCCAATGGGAGCTTAGATAAGATGCTCTACCAAGAATTTGAAGAATGCCCTCCAAACTTCTTGAATTGGTCTCGTAGACTCAATATTGCTGTGGGGTTGGCTTCTGTTCTGACTTACCTGCATCAAGAATGTGAGCAGAGAGTGATTCACAGAGACATTAAGACTGGGAATATACTGCTAGATGGAAATTATAACCCAAGGCTAGGGGATTTTGGATTGGCAAAGCTCATGGATCATGATAGAAGCCCTGTTTCCACATTAACAGCTGGAACAATGGGATATCTTGCACCTGAATATCTCCAGTATGGAATGGCAACTGAGAAAACTGATGTTTTCAGCTATGGGGTAGTTGTGCTTGAAGTGGCTTGTGGGAGGAGGCCAATTGAAAGAGAGGGCCAGAACATGGTCAATTTGGTTGATTGGGTTTGGGGACTGCACTCTGAAGGGAAGATAATTGACGCAGCTGACAGAAAGTTGAAAGGAGAATTCACAGAGGAAGAGATGGAGAAGCTTTTGCTTTTGGGGTTGAGCTGTGCAAACCCAGATAGTGCTGAAAGGCCTTCCATGACAAGAGTCCTACAGATTCTCAACAATGAAGCAGCAGCTCTTGTTGTACCAAAGGTGAAACCAAGCCTCACATTCTCTTGTGGCCTGCCTTTGACACTTGATGAGATTGTTTCGGACAGTGAAGAGGAAATCGTTACCAACCAGTCCATGTGTGAAACAAGAATTAACTTAAGTTAA 2028 0.4324 MCSRRSFLFFFLALSGFLDPTVLAEKVTFEFPSFTLRNITLLGDSYLRNGVIGLTRATDVPTSSSGAMVYDNPISLYDPETNITASFSTRFAFSINNLNPSSFGDGLAFFLSPSNQTLGSPGGYLGLVNSSELTRNKFVAIEFDTRLDLDFNDPNENHVGLDIDGVNSIKTEDLILQGIDLKNESLITAWIDYKSEQRKLNVFLSYSSFKPEKPILSVDIDLSIYFKEIMYVGFSASTEGSTELHQIENWSFETNVFLPARSKLHPHNVSDSLVTVSVDIPRSNSSKKRDKRLGVGIAIAGPAFFCVILSIFGYISVRKWRGIRRQKSLKSEFVACPREFNYKELKSATKGFHSSRIIGQGSFGTVYKAFFIYSGTIAAVKRSRHSHQGKTEFLSELSIIAGLRHKNLVQLQGWCVEKGELLLVYDFMPNGSLDKMLYQEFEECPPNFLNWSRRLNIAVGLASVLTYLHQECEQRVIHRDIKTGNILLDGNYNPRLGDFGLAKLMDHDRSPVSTLTAGTMGYLAPEYLQYGMATEKTDVFSYGVVVLEVACGRRPIEREGQNMVNLVDWVWGLHSEGKIIDAADRKLKGEFTEEEMEKLLLLGLSCANPDSAERPSMTRVLQILNNEAAALVVPKVKPSLTFSCGLPLTLDEIVSDSEEEIVTNQSMCETRINLS 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1900 675 Pfam Legume lectin domain 27 256 IPR001220 GO:0030246
Glsi10g1900 675 Pfam Protein kinase domain 352 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1900 675 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 261 IPR013320 -
Glsi10g1900 675 FunFam L-type lectin-domain containing receptor kinase VIII.1 25 265 - -
Glsi10g1900 675 CDD STKc_IRAK 358 626 - -
Glsi10g1900 675 Gene3D - 24 270 - -
Glsi10g1900 675 PANTHER - 54 634 - -
Glsi10g1900 675 ProSiteProfiles Protein kinase domain profile. 352 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1900 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Glsi10g1900 675 ProSitePatterns Protein kinases ATP-binding region signature. 358 381 IPR017441 GO:0005524
Glsi10g1900 675 FunFam L-type lectin-domain containing receptor kinase VIII.1 316 427 - -
Glsi10g1900 675 CDD lectin_legume_LecRK_Arcelin_ConA 27 255 IPR001220 GO:0030246
Glsi10g1900 675 SMART serkin_6 352 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1900 675 Gene3D Phosphorylase Kinase; domain 1 316 427 - -
Glsi10g1900 675 FunFam L-type lectin-domain containing receptor kinase VIII.1 428 642 - -
Glsi10g1900 675 Gene3D Transferase(Phosphotransferase) domain 1 428 633 - -
Glsi10g1900 675 SUPERFAMILY Protein kinase-like (PK-like) 335 648 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1900 Glsi-ChrGlsi10 13274469 13276496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1900 3 659 Receptor kinase-like Gene Family AT5G55830 64.688 0.0 864
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Glsi10g1900 Pkinase 3.9e-49 CL0016