Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1884 ATGAATTCTAGGCACTTCTTTCCACCAGACTCTCTGTGCAATTCAGGGTCTATAGTTTCATTTCCTTCAAATTCTGCAGCAAGAGAAGATCATAGGGTGGCTAGTCCCAGAATCAGGTCTTCTAATCATGCTTCAAGGCCTTCCTTTTTGATTCGGATGGCCATGAGAATATCCAGAGCAAGATGGTTTACCTTCTTAAGAAGAGTTTTCCATTACCAAAATGGATCAAGCTCTGATCTAGGGTCCAACCCTTTCAACTCTAGCACTTGGATGATGCTGGAATTCACTGCTTTGATGGTTCAGATAACCATTTCAACCTTCACTTTGGCCATTTCAAAGAGGGAGAAACCTGTTTGGCCTATGAGGATATGGATTTCTGGTTATGATATTGGGTGTGTGCTTAATCTGCTGCTACTTTATGGGCGATATCGTCAACTTCATCTGATTCATGGAGATGCTCTTAGCCTTTCTGATATGGAGCAGCAGAGAGGCAGTGAAGAAACCAGGTGCTCACATTTGATGAACAAGTGCAGGACTTCACTTGAGCTATTCTTTGCTATATGGTTTGTGATGGGCAACGTATGGGTTTTTGACTCACGTTTTGGGTCTTTCCAACAAGCTCCAAAACTCCATGTGCTATGCGTCTCCTTGCTTGCTTGGAATGCCATCACCTACTCTTTTCCTTTCCTTCTGTTTCTGCTGCTTTGCTGCTGTGTCCCACTCATCAGCAGCCTCCTTGGCTACAACATGAACATGGGCTCCTCTGATAAAGGAGCTTCTGATGATCAGATCTCACAGCTACCCAGCTGGAGATATAAACAAGTTCATAGTTCTGAGTTGGAGCATGGCAATGATGAAGAAGAAGCCAGTGAAGGGTTTATCAATGAAGATCCAGAATGCTGCATTTGCTTAGCCAAGTACAAAGACAGAGAAGAAGTTAGACAATTGCCATGTTCTCATATATTTCACCAAAAATGTGTGGATCAGTGGCTCAGAATCATATCTTGCTGCCCTCTCTGTAAACAAGGATTAGAGGCGTGA 1041 0.4332 MNSRHFFPPDSLCNSGSIVSFPSNSAAREDHRVASPRIRSSNHASRPSFLIRMAMRISRARWFTFLRRVFHYQNGSSSDLGSNPFNSSTWMMLEFTALMVQITISTFTLAISKREKPVWPMRIWISGYDIGCVLNLLLLYGRYRQLHLIHGDALSLSDMEQQRGSEETRCSHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFQQAPKLHVLCVSLLAWNAITYSFPFLLFLLLCCCVPLISSLLGYNMNMGSSDKGASDDQISQLPSWRYKQVHSSELEHGNDEEEASEGFINEDPECCICLAKYKDREEVRQLPCSHIFHQKCVDQWLRIISCCPLCKQGLEA 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1884 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 345 IPR013083 -
Glsi10g1884 346 SMART ring_2 300 340 IPR001841 -
Glsi10g1884 346 SUPERFAMILY RING/U-box 292 344 - -
Glsi10g1884 346 Pfam Ring finger domain 299 341 IPR001841 -
Glsi10g1884 346 ProSiteProfiles Zinc finger RING-type profile. 300 341 IPR001841 -
Glsi10g1884 346 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 23 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1884 Glsi-ChrGlsi10 13187126 13189561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1884 49 344 C3H Transcription Factor Family AT4G26580 71.812 5.67e-153 431