Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1883 ATGAAGCAAAATTTCTCTCCTTATATTACAAATTCCACAACTGTGAATGAGCATAGAAAGCACATTGAGAATGATGCAGCCCTGAAAAGACTAAGTCAACCAGTTGAAGTCCTTGAACCATCTGTTGAGGAAACCGTAAAGATTCTAAAAGGCCTTCGTGGAATGTATGGGACTCATCATAAAGTCCGATACACAGATGAAGCTCTTGAGGCTGCTGCAAAACTGTTCCACCAATATGTTAGTGGTCGGTTCTTGCCTGATAAGGCAATTGACTTGATTGATGAGGCTGGATCTCGTGTTCAACATTTTCCCACAAAGGACAAGAAGTGTCATAATATGCTTCCTGAAGTGACAAAATCTGACATTCAACATATTGTCTCTTCATGGACTGGGATCCCAGTAAGTGACTTATCAAGTGAGAAGGGTGAGCGCCTCCTCAAATTGGAAGAGAAGCTTCAAAAATATGTTATTGGCCAGAATAAAGCTATCAACTCCATTTGCCGAGCCATTCGCCATGCCAGACTTGGTCTTGGAAACTTGAGAAGGCCTATCGCTAGTTTTATGTTCACTGGGGCCACCGGTGTGGGGAAGACTGAATTGGCAAAAGCACTGGCTGCACACTATTTTGACTCAGAAGATGCCTTGATAAGATTGGACATGACTGTTAGGAACCAGCCTCATGCAGTTGTCCTTTTTGATGAGATTGAAAAAGCACCTTCAGATGTCTTCAACCTAATGCTTCAGATTCTTGATGATGGTAGGCTCACAGATGGCAAGGGGCAGACTGTAGACTTCAAGAGCACATTCATTATAATGACTAGCAACTTTGGTAACTGCATCGTTGAGGAGGGTAGTAACAGGACTGATGAGCTAGCAAATGAGAAACATAATTCCTGTATAAAGAAGGTAGTGAAGGATGAACTGAAGCTGCATTTTAAACCAGAGTTTCTGAATAGATTTGATGAGATTATTGTCTTTAAGCAAATAACAAAGCTGGATGTGAAGCAGATTGCAGATTTAATGCTGAGAGAAGTGTGTGAGAGGCTGAGGGCCAGAGATATGCAGCTTTCTGTGACTTGTAGGTTTAGGGACCATGTAGTTGAACATGGAAACGACCCCAGGTACGGTGCTAGGCCATGGAGAAGAACAATTTCAAGATTATTAGAGGATGCACTGGAAGAAAAGATGCTAACAAAAGAGATAAAAGAAGGAGGCTCAGTTATGGTAGACATTAATACTGAGGGATACGTTGTTGTGCTCAACCAGAAAAATGCTACAAGGGAAGTTCTTTCTAAGAATATTGTAGCTGGTGAAAAAAGAAGAAAAGAGGCTGGAGTGTCGTGCAATTTGATGGGCAAGATGTTAGACCTGCTGGGCAATTGGAAAAATCTTCTGCCTTTCAGGGAAGAGGAAGCATGTTCATTGAAGTTGATAATTATTGCTGCTAATGATGATTTATCCCCAGAATTCTTAACAAGCATTCTCTTTCAGAGGAAATCCTTATCATCCTGTTCTGCTGGAATTTTAATGAAGTGGGGATGAAAAAGAAATATGGAGCACAACGAGGAGCAAAAGTCCCCGAGGATCATGGTGGGGAAGCTGAGTAATTGCCAAATAAAAATTCCGGACTTGGATTTGAATGATTTCAAGAAGCATGCACATTTTCTTGTGACACCAAAATCTCAAGTGGCCACCGGGAGATCTTCAAGTGATAAATGGAATTGTTTATGCTCCCCCACCACCCATGCTGGTTCCTTCCGGTGCCGGTACCATCGGAATGCTGGTCTCCAGCGCGGCAGATCAGTCGGCTCTAATCTCTCTGAATTGACCTCTAAATCAAAGAGGTTTATTTTTCAAAACAAAAAAACATCTTGGGAGTTCATCCATGTTGGGCCTTTGAAGCCCAAAAGAGTCGTACTCATCCAGAACCGGTCCCGGGTCTGGCGCGTATCCGTGTCCGGGGGGGAGATTCTTTCTTCTTCAATCCTTAACGAGAGGAAAGAAGCGAGGGGACAACTGAAAAAACGAACTCAGAATTTCCACTGTTACTCGCTTCGTTTAGAAGCTCCAGAGGCAAATTCTCTTTGCTCTCGGTTGAGGCCATTTCTCTGGTTGTCAATGTTGACTACTAGTGCAGTTGCATCTTTGCCTCAATTGCCACCAGTCAGAAGAGGTGGCTACCATACAGAAGAGAATAATGTTGCTAGATCTAATCTACCTAGGGTTAGCTTGCAATTTTACCCTTCTCATGGGCAAAGAGAATTACAGAAGATTACTCATTCAAGATCTCTGGGTTGTACACATATTTCATTTTGTAGAAGCGCTCATTCTGTTCGAAATGTGACTGTAATATGTGCTGCAGCACTGAATGCAAGATGTGCTGCAGAACAAACTCAAACTGTTACACGCCAGGCTCCTACAATTACACATATTCCTGGCAAGGAGAAGTCACCCCAACTCGATGATGGTGGAACTGGATTTCCACCTGGTGGTGATGATGGTGGTGGTGGTGGAGGAGGTGGAGGTGGAGGCAACTGGTCTGGTGGGTTCTTCTTTTTTGGGTTTCTTGCTTTTCTGGGTATTTTAAAGGATAAGGAAAGCGAAGGATCTTACAGAGACAACCGAAGAAGGTGA 2634 0.4309 MKQNFSPYITNSTTVNEHRKHIENDAALKRLSQPVEVLEPSVEETVKILKGLRGMYGTHHKVRYTDEALEAAAKLFHQYVSGRFLPDKAIDLIDEAGSRVQHFPTKDKKCHNMLPEVTKSDIQHIVSSWTGIPVSDLSSEKGERLLKLEEKLQKYVIGQNKAINSICRAIRHARLGLGNLRRPIASFMFTGATGVGKTELAKALAAHYFDSEDALIRLDMTVRNQPHAVVLFDEIEKAPSDVFNLMLQILDDGRLTDGKGQTVDFKSTFIIMTSNFGNCIVEEGSNRTDELANEKHNSCIKKVVKDELKLHFKPEFLNRFDEIIVFKQITKLDVKQIADLMLREVCERLRARDMQLSVTCRFRDHVVEHGNDPRYGARPWRRTISRLLEDALEEKMLTKEIKEGGSVMVDINTEGYVVVLNQKNATREVLSKNIVAGEKRRKEAGVSCNLMGKMLDLLGNWKNLLPFREEEACSLKLIIIAANDDLSPEFLTSILFQRKSLSSCSAGILMKWGXKRNMEHNEEQKSPRIMVGKLSNCQIKIPDLDLNDFKKHAHFLVTPKSQVATGRSSSDKWNCLCSPTTHAGSFRCRYHRNAGLQRGRSVGSNLSELTSKSKRFIFQNKKTSWEFIHVGPLKPKRVVLIQNRSRVWRVSVSGGEILSSSILNERKEARGQLKKRTQNFHCYSLRLEAPEANSLCSRLRPFLWLSMLTTSAVASLPQLPPVRRGGYHTEENNVARSNLPRVSLQFYPSHGQRELQKITHSRSLGCTHISFCRSAHSVRNVTVICAAALNARCAAEQTQTVTRQAPTITHIPGKEKSPQLDDGGTGFPPGGDDGGGGGGGGGGGNWSGGFFFFGFLAFLGILKDKESEGSYRDNRRR 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1883 877 Pfam AAA lid domain 41 109 IPR041546 -
Glsi10g1883 877 SMART ClpB_D2_small_2 329 418 IPR019489 -
Glsi10g1883 877 Pfam C-terminal, D2-small domain, of ClpB protein 331 409 IPR019489 -
Glsi10g1883 877 Gene3D - 42 112 IPR027417 -
Glsi10g1883 877 Gene3D - 113 221 IPR027417 -
Glsi10g1883 877 Gene3D - 222 327 IPR027417 -
Glsi10g1883 877 Gene3D - 329 432 - -
Glsi10g1883 877 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 413 IPR027417 -
Glsi10g1883 877 MobiDBLite consensus disorder prediction 808 842 - -
Glsi10g1883 877 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 102 IPR027417 -
Glsi10g1883 877 PANTHER ATP-DEPENDENT CLP PROTEASE 11 220 - -
Glsi10g1883 877 FunFam ATP-dependent Clp protease ATP-binding subunit 42 134 - -
Glsi10g1883 877 SMART AAA_5 183 330 IPR003593 GO:0016887
Glsi10g1883 877 Pfam AAA domain (Cdc48 subfamily) 182 221 IPR003959 GO:0005524|GO:0016887
Glsi10g1883 877 Pfam AAA domain (Cdc48 subfamily) 225 323 IPR003959 GO:0005524|GO:0016887
Glsi10g1883 877 CDD RecA-like_ClpB_Hsp104-like 144 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1883 Glsi-ChrGlsi10 13169241 13186625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1883 777 877 C2H2 Transcription Factor Family AT1G56200 70.874 6.03e-16 74.3