Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1876 ATGCCTGGAAGCTTAAGGACTCCATCACTTTCTCCCAAAATCATCTTCTCCTTCTCCTTCACCTTGCTTCTCTCAATAAACTCTCTTCTCTTCTCATGCTGCTACTCCATTAATGAACAAGGCCAAGCTCTTCTGACATGGAAGAACAGTTTAAACAATTCTGCAGATGCATTAGCTTCTTGGAATCCTTCAGACCCAAGCCCATGCAACTGGGTTGGGGTGTACTGCAATTTAGAAGGCGATGTGATAGAGATAAACTTGAGATCAGTGGATTTGCAAGGCTCATTGCCTTCAAATTTTCAACCTCTCAGGTCCTTGAATGTTCTTGTCCTCTCATCAATGAACATCACAGGGACAATCCCAAGAGAAATTGGAGACTATAAAGAGCTTATTTTTATTGATCTTAGCAGAAATTCTCTTGTGGGTGAAATTCCAGAAGAAATTTGCAGGCTGAGCAACTTGCAGAGTTTGTCTCTGCATATGAACTTGCTTGAAGGCAATGTTCCATCCGGCATTGGAAATTTATCAGCTCTTGTGAATCTGACCCTCTATGACAATCAACTCAGTGGTGAAATTCCAAAGAGTATTGGATCCTTAAGCAAGCTCCAAGTGTTCAGAGCAGGTGGGAATAAGAACCTTAAGGGTGAGCTGCCATGGGAGATTGGAAACTGCACCAACTTGGTCACGTTAGGCCTTGCAGAAACCAGCATTTCTGGGACTCTTCCTTCTTCAATTGGAATGCTGAAAAGGATTAAAACCATAGCCATTTACACAACTCTATTGTCTGGTTCTATTCCGGAAGAGATTGAGAATTGCAGTGAGTTGCAGAACCTGTACTTGTATCAGAACTCTATCTCTGGTTCAATACCAAGTCGAATTGGAGGGCTCAGAAAGCTTGAGAGTCTACTTTTGTGGCAGAACAGCATGGTGGGTACAATCCCAGAAGGATTAGGAAGCTGCAAAGAGCTTAAAGTCATAGACTTTTCAGAAAATCTTCTCACAGGAAGCATACCAAGGAGTTTTGGAAAACTTTCAAATCTTCAAGAGCTTCAACTTAGTGTTAATCAATTGTCCGGTACCATACCTCCTGAGATTTCAAATTGCACTTCTCTTATTCAGCTTGAACTCGACAACAATGCCATTTCCGGCGAGATTCCAGCTTCTATCGGCAACTTGAAAAGCTTGAATCTGTTCTATGCATGGCAGAACAAGTTCACAGGACAAATCCCAGACAGTCTTTCAGATTGTTATGATCTTCAGGCACTTGATCTGTCTTACAACAATTTGATTGGTCCAATACCCAGAAAACTATTTGGGTTAAGAAATCTCACTAAGCTTTTGCTTCTTTCTAATGATTTATCAGGCTTTATACCACCTGATATAGGCAACTGCACAAGTCTCTACAGGTTAAGGTTGAATCACAATAGACTTGCAGGTACCATTCCATCTGAGATTGGAAGCTTGAAGAACTTGAATTTCTTGGATATTAGCAGCAACCATCTTGTAGGAGAGATCCCTTCAACACTCTCTGGATGCCAAAACCTTGAGCTTCTTGACCTTCATTCAAATAGTCTTACAGGTTCTGTCCCAGAAAATCTACCCAAAAGCTTGCAGGTAATTGACTTCTCAGATAACATTCTAACAGGTTCTCTGAGTCATTCAATTGGTTCTTTGGCTGAATTAACCAAACTCAACCTGGGAAAGAATCAGCTCAGTGGAAGAATTTCAGCAGAGATTCTAACTTGTTCTAAGTTACAACTTCTAGACTTGGGAAGCAACGGTTTCTCTGGAGAAATTCCCAAGGAAGTGGGTCTGATTCCTTCACTGGAAATCTCTCTGAATCTCAGTTGGAATCAATTTTCTGGGAAAATCCCATCCCAGTTCTCTAGTCTTACCAAACTGGGAGTGCTTGATCTCTCTCACAACAGGCTTTCTGGGAACTTAGACCCTCTCTCTGACCTTCAGAATCTTGTTTCCTTAAACGTTTCCTTCAATGGCTTCTCTGGTGAATTGCCCGACACCCCATTCTTCAGAGAACTCTCTCTCAGTGATCTCACTGCAAATGAAGGCCTCTTCGTCTCCAATGGAGCTAGGGTGGGGCCCACAGGTCATGCAAGATCAGCTATGAAGTTCACAATGCCCATTCTCTTAAGCACAAGTGCAGTACTAGTACTCCTCACAGTCTATGTCTTGGTTCGTTCTCACATAATGGCAAAAAAAGCAATCATGGAAAATGACAAATGGGAAATGACTCTATATCAGAAGCTTGAGTTCTCCATTGATGACATTGTCAAGAACTTGACATCATCCAATGTGATAGGCACTGGAAGCTCTGGGGTTGTGTACAGGGTAACAATCCCCAATGGTGAGAAAACACTAGCAGTGAAGAAGATGTGGTCATCAGAAGAATCTGGAGCCTTCAGTTCTGAGATTCAGACTCTGGCTTCAATCAGACACAAGAACATCATCAGGCTTCTGGGTTGGGGATCCAACAAGAACTTGAAGCTGCTGTTCTATGATTACCTCCCTAAAGGAAGCTTGAGCTCAATGCTTCATGGTTCAGGAAAGGGAGGAGGAGCAGAATGGGAGACGAGGTACGATGTTGTCTTGGGGGTGGCTCATGCACTTGCCTATTTGCACCATGACTGTGTGCCTGCTATACTGCATGGAGATGTCAAAGCCATGAATGTGTTATTGGGTCCTGGCTTTCAACCTTACCTTGCTGACTTTGGCTTGGCAAGAACTACAAATGAGACTATTGATGGATCCAAGTCCAAGCCAGTTCAAAAACCTTACCTTGCTGGTTCCTATGGATACATGGCTCCTGAGCATGCATCAATGCAGGGCATCACTGAGAAGAGTGATGTGTACAGTTTTGGTGTGGTTCTTCTTGAGGTGCTAACTGGAAGGCACCCATTGGACCCAACTCTCCCCGGGGGTGCACACTTGGATCAGTGGGTCCGGAACCACTTAGCCAGAAAAGGAGACCCATCCGACATTCTTGACCAAAAGCTGAGAGGGAGGGCTGACCCTACAATGCATGAGATGCTGCAAACTCTGGCTGTGTCATTTCTGTGTGTCAGCACAAGAGCTCATGACCGTCCAACTATGAAAGACGTGGTAGCAATGCTCAGGGAAATAAGACCTCTTGAGGTCTCAAGGGCTGACCCTGACATATTGAAGGCACATAGTTCACCGCCGCCACCACCCAAGAACTTGGTTTTACATGGTTCTTCTAACTGCTCCTTTAATTTCTCTGATGACTCAAACTGTTGA 3276 0.4371 MPGSLRTPSLSPKIIFSFSFTLLLSINSLLFSCCYSINEQGQALLTWKNSLNNSADALASWNPSDPSPCNWVGVYCNLEGDVIEINLRSVDLQGSLPSNFQPLRSLNVLVLSSMNITGTIPREIGDYKELIFIDLSRNSLVGEIPEEICRLSNLQSLSLHMNLLEGNVPSGIGNLSALVNLTLYDNQLSGEIPKSIGSLSKLQVFRAGGNKNLKGELPWEIGNCTNLVTLGLAETSISGTLPSSIGMLKRIKTIAIYTTLLSGSIPEEIENCSELQNLYLYQNSISGSIPSRIGGLRKLESLLLWQNSMVGTIPEGLGSCKELKVIDFSENLLTGSIPRSFGKLSNLQELQLSVNQLSGTIPPEISNCTSLIQLELDNNAISGEIPASIGNLKSLNLFYAWQNKFTGQIPDSLSDCYDLQALDLSYNNLIGPIPRKLFGLRNLTKLLLLSNDLSGFIPPDIGNCTSLYRLRLNHNRLAGTIPSEIGSLKNLNFLDISSNHLVGEIPSTLSGCQNLELLDLHSNSLTGSVPENLPKSLQVIDFSDNILTGSLSHSIGSLAELTKLNLGKNQLSGRISAEILTCSKLQLLDLGSNGFSGEIPKEVGLIPSLEISLNLSWNQFSGKIPSQFSSLTKLGVLDLSHNRLSGNLDPLSDLQNLVSLNVSFNGFSGELPDTPFFRELSLSDLTANEGLFVSNGARVGPTGHARSAMKFTMPILLSTSAVLVLLTVYVLVRSHIMAKKAIMENDKWEMTLYQKLEFSIDDIVKNLTSSNVIGTGSSGVVYRVTIPNGEKTLAVKKMWSSEESGAFSSEIQTLASIRHKNIIRLLGWGSNKNLKLLFYDYLPKGSLSSMLHGSGKGGGAEWETRYDVVLGVAHALAYLHHDCVPAILHGDVKAMNVLLGPGFQPYLADFGLARTTNETIDGSKSKPVQKPYLAGSYGYMAPEHASMQGITEKSDVYSFGVVLLEVLTGRHPLDPTLPGGAHLDQWVRNHLARKGDPSDILDQKLRGRADPTMHEMLQTLAVSFLCVSTRAHDRPTMKDVVAMLREIRPLEVSRADPDILKAHSSPPPPPKNLVLHGSSNCSFNFSDDSNC 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1876 1091 ProSiteProfiles Leucine-rich repeat profile. 633 655 IPR001611 GO:0005515
Glsi10g1876 1091 Gene3D Ribonuclease Inhibitor 435 533 IPR032675 -
Glsi10g1876 1091 Gene3D Ribonuclease Inhibitor 612 697 IPR032675 -
Glsi10g1876 1091 SUPERFAMILY L domain-like 612 683 - -
Glsi10g1876 1091 Gene3D Transferase(Phosphotransferase) domain 1 842 1058 - -
Glsi10g1876 1091 Pfam Leucine rich repeat 466 525 IPR001611 GO:0005515
Glsi10g1876 1091 Pfam Leucine rich repeat 297 357 IPR001611 GO:0005515
Glsi10g1876 1091 FunFam Leucine-rich receptor-like protein kinase family protein 37 195 - -
Glsi10g1876 1091 SMART LRR_sd22_2 512 535 - -
Glsi10g1876 1091 SMART LRR_sd22_2 631 650 - -
Glsi10g1876 1091 SMART LRR_sd22_2 272 298 - -
Glsi10g1876 1091 SMART LRR_sd22_2 175 201 - -
Glsi10g1876 1091 SMART LRR_sd22_2 320 349 - -
Glsi10g1876 1091 Gene3D Ribonuclease Inhibitor 534 611 IPR032675 -
Glsi10g1876 1091 SMART serkin_6 767 1025 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1876 1091 Pfam Protein kinase domain 770 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1876 1091 SUPERFAMILY RNI-like 289 610 - -
Glsi10g1876 1091 ProSitePatterns Serine/Threonine protein kinases active-site signature. 887 899 IPR008271 GO:0004672|GO:0006468
Glsi10g1876 1091 FunFam Putative LRR receptor-like serine/threonine-protein kinase 612 697 - -
Glsi10g1876 1091 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 378 1039 - -
Glsi10g1876 1091 SUPERFAMILY Protein kinase-like (PK-like) 756 1065 IPR011009 -
Glsi10g1876 1091 ProSiteProfiles Protein kinase domain profile. 767 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1876 1091 Gene3D Phosphorylase Kinase; domain 1 730 841 - -
Glsi10g1876 1091 ProSitePatterns Protein kinases ATP-binding region signature. 773 797 IPR017441 GO:0005524
Glsi10g1876 1091 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Glsi10g1876 1091 Gene3D Ribonuclease Inhibitor 209 434 IPR032675 -
Glsi10g1876 1091 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 736 841 - -
Glsi10g1876 1091 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 196 287 - -
Glsi10g1876 1091 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
Glsi10g1876 1091 Gene3D Ribonuclease Inhibitor 37 195 IPR032675 -
Glsi10g1876 1091 FunFam Leucine-rich receptor-like protein kinase family protein 339 611 - -
Glsi10g1876 1091 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 842 1062 - -
Glsi10g1876 1091 SMART LRR_typ_2 344 368 IPR003591 -
Glsi10g1876 1091 SMART LRR_typ_2 296 320 IPR003591 -
Glsi10g1876 1091 SMART LRR_typ_2 558 582 IPR003591 -
Glsi10g1876 1091 SMART LRR_typ_2 488 512 IPR003591 -
Glsi10g1876 1091 SMART LRR_typ_2 151 175 IPR003591 -
Glsi10g1876 1091 SMART LRR_typ_2 440 464 IPR003591 -
Glsi10g1876 1091 SMART LRR_typ_2 631 661 IPR003591 -
Glsi10g1876 1091 SUPERFAMILY L domain-like 35 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1876 Glsi-ChrGlsi10 13115063 13119044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1876 34 1089 Receptor kinase-like Gene Family AT5G56040 68.135 0.0 1426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi10g1876 Pkinase 1.2e-36 CL0016