Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1874 ATGGCTGCAATGCAACAGCTGTTTGATGAAACTGCTGGGAACATGATGCGCGGGGACTTGAGATTTATTGGTTTCTTTATCCGTGAATTTCAACCAATATTTTTCAGGTCTTTGCCGATGGATACTAAATCTGTTGTAGAATTAATAGAGTCATCCTCGGAGGTTCATTTTTCTGGATTTCACATGGATGGTATAGAGAAAATAAATGCTGGGCCAGAACCACCAACAACTTCAGCAACCGACCACATGTACAATCAACCTTTTGTCATAGGTGTTGCCGGGGGAGCAGCTGCTGGGAAGACTACAGTTTGTAATATGATTATTCAGCAGCTTCATGACCAACGAGTTGTACTTGTTAATCAGGATTCTTTTTATCATAATTTGACTGAGGAGGAACTTAGTAGAGTACAGGATTACAACTTTGATCATCCTGATGCTTTTGATACTGAGCAATTGCTAGGAGTTATGGACAAATTGAAGCATGGCCAAGCAGTAGATATTCCCAACTATGACTTCAAGAGTTACAAGAGCGATGCATTTGCACCAAGAAGGATAAACCCTTCAGATGTTATACTTTTGGAAGGCATTCTTGTATTCCATGACCCACGTGTTCGGGGGTTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGTCTAGCAAGGAGGATCAAGCGTGATACTGTTGAGAAGGCTCGGGATATTGGTGCAGTGCTTGATCAGTATTCCAAATTTGTGAAGGCAGCTTTTGATGACTTTATTCTTCCTACCAAGAAGTATGCCGATATCATTATACCCCGTGGAGGAGACAATCATGTGGCCATTGATTTGATTGTACAGCATATCCACACAAAGCTTGGTCAGCATGACCTATGTAAAATATATCCTAATCTGTATGTTATACAATCAACTTTTCAGATACGCGGTATGCATACCCTGATACGCGATTCTCAGACAATGAAGGATGATTTTGTTTTTTATGCTGACCGTTTGATCCGTTTGGTTGTTGAACATGGCTTGGGACATCTGCCATTTACAGAAAAGCAAGTAATAACTCCAACTGAGTCTGTATACACTGGAGTGGATTTTTGTAAAAGGTTATGTGGTGTCTCTGTCATCAGGAGTGGGGAGAGTATGGAGAATGCTTTACGAGCATGCTGTAAAGGTATCAAGATTGGGAAAATTCTTATTCATAGAGAAGGTGACAATGGCCAGCAGCTGATATATGAAAAGTTGCCTAATGATATCTCAGATAGGCACGTGCTACTATTGGACCCTATCCTAGGAACAGGAAATTCGGCAGTTCAAGCGATTTCTTTACTTTTAAGAAAGGGGGTACCGGAGTCCAACATTATATTTCTTAATCTCATATCAGCACCTCAAGGTGTGCATGTGGTCTGCAACAGCTTTCCGAGAATAAAAATCGTGACATCTGAGATTGATACTGGTTTGAATGAAGATTTCCGCGTCATACCCGGCATGGGTGAGTTTGGGGACCGATATTTTGGTACAGACGATGATCAGCCGGTGGTGCCTTCTTCACAGTAG 1554 0.4138 MAAMQQLFDETAGNMMRGDLRFIGFFIREFQPIFFRSLPMDTKSVVELIESSSEVHFSGFHMDGIEKINAGPEPPTTSATDHMYNQPFVIGVAGGAAAGKTTVCNMIIQQLHDQRVVLVNQDSFYHNLTEEELSRVQDYNFDHPDAFDTEQLLGVMDKLKHGQAVDIPNYDFKSYKSDAFAPRRINPSDVILLEGILVFHDPRVRGLMNMKIFVDTDADVRLARRIKRDTVEKARDIGAVLDQYSKFVKAAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIHTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDSQTMKDDFVFYADRLIRLVVEHGLGHLPFTEKQVITPTESVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLLRKGVPESNIIFLNLISAPQGVHVVCNSFPRIKIVTSEIDTGLNEDFRVIPGMGEFGDRYFGTDDDQPVVPSSQ 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1874 517 FunFam Uridine kinase 291 506 - -
Glsi10g1874 517 Gene3D - 291 506 IPR029057 -
Glsi10g1874 517 Gene3D - 84 290 IPR027417 -
Glsi10g1874 517 SUPERFAMILY PRTase-like 290 507 IPR029057 -
Glsi10g1874 517 CDD PRTases_typeI 364 479 IPR000836 -
Glsi10g1874 517 Pfam Phosphoribulokinase / Uridine kinase family 89 275 IPR006083 GO:0005524|GO:0016301
Glsi10g1874 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 280 IPR027417 -
Glsi10g1874 517 FunFam Uridine kinase 84 290 - -
Glsi10g1874 517 PANTHER URIDINE KINASE 80 416 - -
Glsi10g1874 517 CDD UMPK 100 287 IPR000764 -
Glsi10g1874 517 NCBIfam uridine kinase 86 287 IPR000764 -
Glsi10g1874 517 PRINTS Uridine kinase signature 255 268 - -
Glsi10g1874 517 PRINTS Uridine kinase signature 162 177 - -
Glsi10g1874 517 PRINTS Uridine kinase signature 219 229 - -
Glsi10g1874 517 PRINTS Uridine kinase signature 233 244 - -
Glsi10g1874 517 PRINTS Uridine kinase signature 117 128 - -
Glsi10g1874 517 PRINTS Uridine kinase signature 87 104 - -
Glsi10g1874 517 Pfam Uracil phosphoribosyltransferase 305 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1874 Glsi-ChrGlsi10 13083096 13092836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1874 40 509 PRT Gene Family AT4G26510 83.439 0.0 811
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0237 08 2066284 2073869 Glsi10g1874 10 13083096 13092836 CCT
Glsi10g1874 10 13083096 13092836 Glsi10g1874 10 13083096 13092836 ECH