Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1871 ATGATGGCCGAGGGGGAAGTGAAGCTAGTGGGTGTGGGTCTAGAAGAAGAAGAAAAATATGGAGAAAAATGGGTGAAATACTACTCTTCTAATCATCAAATATTGTTGGTGGGTGAGGGTGATTTCTCTTTCTCCCTTTGCTTGGCCCAGTCTTTTGGCTCAGCTTCCAACATTGTTGCTTCCTCCCTTGACAGACATGGTGATGTTATGAAGAAGTACAAGAAGGCAATGTCAAATTTAGATGACTTGCAAAAGCTGGGAGCATCTGTGCTACATGGAGTAGATGCAACCAAAATGAAACTTCACCCAGATTTGAAAATGCGGAGATTTGATAGAGTTATATTCAACTTTCCTCATGCAGGTTTTCATGGAAGGGAAGATAGCCTATCCCTGATAAAAAAGCACAAAATCCTTGTGCGTGGTTTCTTCATGAATGCGAGTTGCATGCTTCGACCCAGTGGCGAAATCCATGTAAATCACAAGACTACAGCTCCCTTCAGTAACTGGAACATAGAGAAGCTTGCCATGCAAAGCCTTCTGACACTAGTCCGGTGTGCTGATTTCAAGAAAGAAGATTACCCAAGCTACGACAACAAACGAGGTCATAGCCTTAGATGTGATGAGCCTTTCCCACTGGGTAAATGCAGCACTTTCATATTTGTTAGAGCAAGGGAAACCCCCAAGATTAGAAATCGTATAATGGGATCCATGAAACAAAGAAATCTCCCATTCCAAGTGCCAACCTCATTTGATCTCAATTATTATCCTCGAAGAAGTCACATTCCAATCCTTGGTAGCTACTCGAACAGTGCTGCTTGCTATTCTGTTCATGGAATCAATTCTGACTTGCAGAGATCATGGCAGCCATTGCAGCCATGGCCAACGTTAATTAATGTTAGAAATATGGATATGGTACCCTTTCCACTTGCTGCTAGAAATGAACCCTTCCAGGTCTTTGGTAGAAACTCATCAAGTTATTTAGCAGAGGCACTTGGAAATACAGCTCAGAATGCAAGTTTTTCTTTTCAGAGATTAAGGCCTGAGTTTGAGAGATACATTGTTGAAGTGCCCGGAAGAACTTTGAATGATGAAATCTATATTCAGCGTGAGCTTCACAGAAGAGGAAGAGTATTTGGAGGCGTGAGTTCGGTGTCACTAGAAGGTAAAGATAAAGATGAAGTGGTGGTGACCGGCGAGGAGGTGGATTCGGTGTGCCTGGCTAGGGTGCTGAGAAAGAAGTTCCGCCACGCCGACATCGTCACTGTGCAGGAAGTGAAAGACGAAGATAAAGAGAAAAAGAAAGAAGAGAGCAAGCTGCCTTTGTATTATTATAATCAGTAAGCAGCCAAACTGGGAAAGCTCGGAGAGTTCTTGTTGGAGGGTATCTTCGATTGCATCCAGGAAATCACATCGGCACTTGCTTTTTCTGATAGGATGAGCGACTCTGCGTACAGAGTCGAAACCATGTCCCGTCTCGCCCAATGGAGGATCGACAACTTCTCTTCCTGCTCTTACCGCAAATCCGATCCTTTCAGGATCGGCAAGTGGCATTGGCACTTAACTCTAGAAAAGAACAGGGTTTTATTTGTTAAATTGTACCCAGAAATATCCAATCTGACGAGAGATAATCCCCCGACTGCATCATTCATCATAAGGGTTGTTAGTTCTGCTGGAGATCGCAAGGCCTTGACCCATATAGAAATCAAAGACAAACTGCTCAAGAACAACGAAGACTTTGTTTGGGCAATTGACGTTCCACTAACTGGAAAATTCATTATTGAACTTGAGTTCCTTGACTTAAAGACGGCATCCCCAAAGGGTGAAGAACGTTGCTCCATCTGGGCTGACGAATTTACGGAGAAAAGATCAAATACAACAGCCCTTGAATCTCTTGTTCGAATGTTTACAGAACGCATCCACACTGACATCATGATCAATGCTTTAGATGGAAGCATTGATGCCCATCGTGCTGTTCTTGCTGCTCGGTCACCTGTCTTCCGCAGCATGTTCTCTTATAATCTAAAGGAGAACAAGCTATCCATCATAAACATCTCAGACATGTCGATTGAAGCTTGCCAAGCTTTTCTCGGTTATCTTTACGGGAGCATCAAACATGAAGAATTTCTGAAACATAGGTTGGTCCTTCTGCATGCAGCTGATAAGTATGACATATCTGACCTAAAAGAGGCATGCCATGAGAGTCTTCTAGAAGATATTGATGCAAATAACGTACTTGAGAGGCTCCAAAACGCATCTTTATATCAATTGCCGAAACTAAAGATTAGCTGTATGCGATATCTTGTGAAATTTGGTAAAATATTTGACATTCGGGATGATTTCGATACCTTTTTGAAACATGCAGACAGGGATCTAATTACTGAAATTTTCCGTGAAGTTCTCAATTCCTGGAAAGGATTCTGA 2421 0.4254 MMAEGEVKLVGVGLEEEEKYGEKWVKYYSSNHQILLVGEGDFSFSLCLAQSFGSASNIVASSLDRHGDVMKKYKKAMSNLDDLQKLGASVLHGVDATKMKLHPDLKMRRFDRVIFNFPHAGFHGREDSLSLIKKHKILVRGFFMNASCMLRPSGEIHVNHKTTAPFSNWNIEKLAMQSLLTLVRCADFKKEDYPSYDNKRGHSLRCDEPFPLGKCSTFIFVRARETPKIRNRIMGSMKQRNLPFQVPTSFDLNYYPRRSHIPILGSYSNSAACYSVHGINSDLQRSWQPLQPWPTLINVRNMDMVPFPLAARNEPFQVFGRNSSSYLAEALGNTAQNASFSFQRLRPEFERYIVEVPGRTLNDEIYIQRELHRRGRVFGGVSSVSLEGKDKDEVVVTGEEVDSVCLARVLRKKFRHADIVTVQEVKDEDKEKKKEESKLPLYYYNQXAAKLGKLGEFLLEGIFDCIQEITSALAFSDRMSDSAYRVETMSRLAQWRIDNFSSCSYRKSDPFRIGKWHWHLTLEKNRVLFVKLYPEISNLTRDNPPTASFIIRVVSSAGDRKALTHIEIKDKLLKNNEDFVWAIDVPLTGKFIIELEFLDLKTASPKGEERCSIWADEFTEKRSNTTALESLVRMFTERIHTDIMINALDGSIDAHRAVLAARSPVFRSMFSYNLKENKLSIINISDMSIEACQAFLGYLYGSIKHEEFLKHRLVLLHAADKYDISDLKEACHESLLEDIDANNVLERLQNASLYQLPKLKISCMRYLVKFGKIFDIRDDFDTFLKHADRDLITEIFREVLNSWKGF 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1871 806 CDD BTB_POZ_ZBTB_KLHL-like 640 722 - -
Glsi10g1871 806 SUPERFAMILY TRAF domain-like 491 566 - -
Glsi10g1871 806 Gene3D Potassium Channel Kv1.1; Chain A 616 769 IPR011333 -
Glsi10g1871 806 PANTHER OS08G0495500 PROTEIN-RELATED 483 805 IPR044714 -
Glsi10g1871 806 Gene3D - 351 428 - -
Glsi10g1871 806 FunFam Os09g0479300 protein 32 183 - -
Glsi10g1871 806 SMART BTB_4 641 739 IPR000210 GO:0005515
Glsi10g1871 806 Pfam rRNA (uridine-N3-)-methyltransferase BTM5-like 35 200 IPR019446 GO:0070042|GO:0070475
Glsi10g1871 806 Pfam BTB/POZ domain 635 737 IPR000210 GO:0005515
Glsi10g1871 806 SUPERFAMILY POZ domain 625 737 IPR011333 -
Glsi10g1871 806 ProSiteProfiles BTB domain profile. 641 700 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1871 Glsi-ChrGlsi10 13050498 13063478 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Glsi10g1871 DUF2431 1.6e-47 CL0063