Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1868 ATGTCCGGAACCCTCAACCTCACTCTTCCCGCCGGCCGGCCACTCCGTTTCTCCTCCGACGACAGATTTCTCTCCGCCCCATCCTCCCTGAGATTTCTCCGGCGTCCTTTTGTGGAGTCCGCGAAGCAGTTAAGAGCTTCGATCGGGGCTTTCACGACCGAGACGGGGCCGGCGGTGATCGATTCCCGCCGGCAGGCGAGTCTTTACGAGGTGCTTCGAGTGAATCAGAACGCGTCCCCTATGGAAATCAAGTCGGCTTATAGGGCTTTGGCTAAGCTGTACCATCCTGATTCGGCCGTGCGCCGATCGGAATCCGACGATAGGGACTTCATCGAGATCCACAACGCCTATGCCACGCTCTCCGATCCATCGGCCAGAGCACTGTACGATCTTTCCTTGGTGGCTGCTCGTGGGAGGAGGCGCCCATATACATCGGTTCAGATTCATTCTCCCGGATTCTACCCGACCCGGCGATGGGAGACGGATCAATGCTGGTAG 498 0.5843 MSGTLNLTLPAGRPLRFSSDDRFLSAPSSLRFLRRPFVESAKQLRASIGAFTTETGPAVIDSRRQASLYEVLRVNQNASPMEIKSAYRALAKLYHPDSAVRRSESDDRDFIEIHNAYATLSDPSARALYDLSLVAARGRRRPYTSVQIHSPGFYPTRRWETDQCW 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1868 165 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 6 165 - -
Glsi10g1868 165 SUPERFAMILY Chaperone J-domain 66 152 IPR036869 -
Glsi10g1868 165 CDD DnaJ 69 122 IPR001623 -
Glsi10g1868 165 SMART dnaj_3 66 125 IPR001623 -
Glsi10g1868 165 ProSiteProfiles dnaJ domain profile. 67 133 IPR001623 -
Glsi10g1868 165 ProSitePatterns Nt-dnaJ domain signature. 110 129 IPR018253 -
Glsi10g1868 165 Gene3D DnaJ domain 58 148 IPR036869 -
Glsi10g1868 165 Pfam DnaJ domain 68 130 IPR001623 -
Glsi10g1868 165 PRINTS DnaJ domain signature 69 87 IPR001623 -
Glsi10g1868 165 PRINTS DnaJ domain signature 87 102 IPR001623 -
Glsi10g1868 165 PRINTS DnaJ domain signature 105 125 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1868 Glsi-ChrGlsi10 13018362 13018859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1868 69 130 C2H2 Transcription Factor Family AT1G74250 45.455 1.14e-08 51.6