Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1860 ATGGGTCGTATCCCATGCTGTGAGAAGGATAACGTGAAAAGAGGACAGTGGACACCTGAGGAAGATAACAAGCTTTCCTCCTACATTGCTCAATATGGCACCAGGAACTGGCGCCTCATCCCCAAGAATGCCGAAGAGCAAACCATTGTGAAGCTTCACTCTGTTTTTGGCAACAGATGGTCACTGATAGCAGCCCAGCTGCCAGGGCGCACTGACAATGATGTCAAGAACCATTGGAACACCAAGCTGAAGAAGAAACTCTCGGGCATGGGCATCGACCCTGTGACCCACAAGCCATTCTCTCATTTAATGGCTGAAATTGCAACCACATTAGCACACCCACAGGCTACTCATCTTGCAGATGCAGCCCTTGGCTGCTTCAAAGATGAGGTGCTTCATCTTCTTACCAAGAAACCCTTTCACTTCCAGAACAACATTTCCTCTTACATTAACTGTAAACCGGATGAACAAAAGGATGACGCGATGGAGAAGACTAAGCTTCAAGAACCTGAAATGATACCCTCAAATAGTAATAAACCTTGGGGTTCCATTAATGCAGCTTCACATTCAAGTTTTGCAGAAATCTGCAGTGTTTTTTCTACAACACCTGCGTTTCAATTTAGTGCAGCCATGGATGAGCCATGGAGCCAGAATGTTTGTACGGGAAGAACGTGCACAGAGGCCACGGACGAGCAAGGGCAGGTACGTGAAAAAGCTGAGGAAGAAGATAGAGACAATTCAGAGGGTGAAAAGGAGATTGGAAATGGGTCCAATATATTCAACTCAGACTGTGTCCTGTGGGATTTGGCATCGGATGATCTAATGAACCCCATGGTATAA 840 0.4619 MGRIPCCEKDNVKRGQWTPEEDNKLSSYIAQYGTRNWRLIPKNAEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAHPQATHLADAALGCFKDEVLHLLTKKPFHFQNNISSYINCKPDEQKDDAMEKTKLQEPEMIPSNSNKPWGSINAASHSSFAEICSVFSTTPAFQFSAAMDEPWSQNVCTGRTCTEATDEQGQVREKAEEEDRDNSEGEKEIGNGSNIFNSDCVLWDLASDDLMNPMV 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1860 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 87 IPR017930 -
Glsi10g1860 279 MobiDBLite consensus disorder prediction 227 256 - -
Glsi10g1860 279 PANTHER F14D16.11-RELATED 1 269 - -
Glsi10g1860 279 MobiDBLite consensus disorder prediction 230 251 - -
Glsi10g1860 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 43 IPR017930 -
Glsi10g1860 279 FunFam transcription factor MYB80 41 100 - -
Glsi10g1860 279 Gene3D - 44 99 - -
Glsi10g1860 279 SMART sant 13 85 IPR001005 -
Glsi10g1860 279 Gene3D - 6 43 - -
Glsi10g1860 279 CDD SANT 17 83 IPR001005 -
Glsi10g1860 279 Pfam Myb-like DNA-binding domain 45 81 IPR001005 -
Glsi10g1860 279 Pfam Myb-like DNA-binding domain 14 42 IPR001005 -
Glsi10g1860 279 ProSiteProfiles Myb-like domain profile. 9 83 IPR001005 -
Glsi10g1860 279 SUPERFAMILY Homeodomain-like 11 79 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1860 Glsi-ChrGlsi10 12955515 12957375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1860 1 138 MYB Transcription Factor Family AT5G56110 73.653 1.24e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi10g1860 Myb_DNA-binding 1e-10 CL0123