Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1853 ATGGATCCTGCTCGCTATGGGCTACACCAAGGCTGGGATAATAACAGCGCTCTTGAGGGATATGGTGCAGTCCATGAGCCCAATTTTCGGGTCGGTGGTTCATACAATGAAAGGAGGTTTATAGATGAAAGGTACTCAAGAGATAATATATACCAGAGAAATGCCATCCACCGTGATGTCTTGGATAGGGATGCATATCCGCCATCAGGACCTGCTGTCGGCCATTGGAGTGAATCCAAACGGAGGGGTTATGATGAAGATTATCCTCTGGACAGGGAATCTAGACGTCTTGAGAGGCCTTATTATGATACATATCATCAGGTTGATGCTTTCAGAGATTGTGAGGTTGACACGTATCCGGAATTTGATAAGTTTCGGGATGGCTATGCCAGCATTGAAAACTATGGTGATCGAGGATATGATAAAGCTGGCAGGTTTGGGGAACTTGACCGGGATGACTATGCTTATGATGATTATGGCTACAGGTCTCGTGCATCCCATTATCATAGGGAGGACAGCTATGAGAGGGATTATGATCATGGTCAGCACAGTTATGATTCTGATTATGGAAGAGGTAGTAGAAGAGACAGTAATTGGAGGCGGCGTGAATCCCGTGACCGGGAACATGATAAAAAAAGTCTAAGTCGGGAAAGAGATTTGAGTCCACAAAGGAGACATGAGCGGTCCCATTCTCGGTCCCGGTCCCGGTCCCGATCCCATTCCCATTCTCGTTCTCGTTCTCAATCTCATGGATATGATGATCGTCCAAGATCAAGGTCTCCTCGAGGTCGAAGCCATGGTCGGAGTTATCGAGAAGACAGCTATGCTGATAGTCGATATGAAAGGAGTGAGAAGCGTAGGGATCGTGAAGAGAAACGCCGTGAGCATTTTTCTGTGGCTCCATCTGCTACTGTTGTTGTGAAAGGTTTATCACAGAATGCAAATGAAGAAGACCTATACCAGATCCTTGCGGAATGGGGGCCCCTACGTCATGTTCGTGTTATAAAAGAGAGAAATTCTGGCATCTCTCGTGGATTTGCATTTATTGATTTTCCTTCTGTGGGAGCTGCACGAGCAATGATGGACAAACTTGGAGATGCTGGTCTTGTTGTGGATGGTAGAAAGCTTTTCTTTGAATATAGTAGTAAGCCAACAGGAGGTCCAGGTGGACCTTTTGGTCAAGAGGGATCTATGAGATCAGGTCATAATCATAAAAGCATTACAGTACCATCTGATTGGATGTGCACCATATGTGGCTATATCAATTTTGCACGGCGGACATCCTGCTATCAGTGTAATGAGCCACGAAGTGAGGATGCTCCTGCAGCAGATATTACATTATCAAATCCAACAGCCTTAGGAAAGAAAGGATTAGAGGCAGGTCCAACTCATGTTTTGGTTGTTCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACATTTTTATTCGGTGGAGGATGCTACAAAGGCTCTTGAAGCAACCAATGGAACAACCCTTGAGAAGAATGGGCAGATCCTAAGAGTAGCTTATGCAAAAAGTATCCTGGGTCCTGGATCAGGAACATCAGGACCTTCCCAGTCAAGCAGTCTTGCAGCTGCTGCTATTGAGGCTGCAACATTCGCTCAACAGTATGATTCTGTTGGATGGGCTCCCAAAGAATACAATCCAGATAACAAACAATCTACTGGTCAAGAGCAAACTGGCACAGAAGTTGGGGCTCAGAAGGATGCATTGGCTCCACAATCAGGCTTTGTTTGGGATGAGGCATCTGGTTATTACTATGATGCTGCGTCTGGGTTTTACTATGATGGGAATACTGGTCTTTATTATGATGGTAATAATGGTATTTGGTATTCATATGACCACCAAACTCTGCAATACATCCCTTGCACTGATCAAAATGAGAATAAAGCACCTAATAACCAGTCTGAATCTTCCAAGGCGTCTGATGGTTCTAGCAGTAAAAAAGTGGTGATTTCTGCACCAGCTACTACTGTTACGTCTGCTGAAAGGCCAACTTCATTGGCAGATGCAGTCCAGGCTGCTGCAACAGCTGCCATAGCTGCAGAGAAGAAAGAAAAAGAAAAATTAAAGGAGATAAAGCTTGCTTCAAAAAGCAGCATTCTAGCTAACAAGAAGAAAATGAATAATGTGTTGACAATGTGGAAGCAGAGGAGCCATGAGGGGCAGGCTACTCGTGTGGCCCTGGAGGACAATCAGCAAGCCGTATCTGTTGATGATAGGTCTCTTTCTGGATATTCCACTAAGAGTAAGTTCAAAAATGAGGCTACAGCTGCAAGGGAGAATAATACATCAAGTTCAGGAATCCCCACTGCCCCTACTACCCAATCTGTTGCTTTGGATTCTCAGGTCCAGCCACGGCCTGTTAGTAATAGCCTTGGGGGCACTCTGATGGGGGTTATAAGGGGCTCCGGAAGAGGGATAGGTAAATCAGATACTTATTCTGTACCTACAGCAGCTGCTGCTGCATGTACATCACGCTCATCCACAAATGTAGATGCATCAACAGTTGCCACTCCCTTTAGAACAGATGTCTCTGCTCTGGGCTCATATACATCACCTGTGGCTGCTGGAAGTGGCAGAAGAAGGTTTTCAGAAATGCCTCATTCTGCTTCAACCCCAAAAGAACAACCTCAATCTACCTACAGGGATCGTGCTGCCGAGAGGAGGAGTTTGTATGGTTCATCATCATCAGTTGGGGATGATTTGACTGACCTTGAAACTGGGGATTCAAATCGAGATTTTGCATCGAGGAAGGGTGATCCAATGCCTTTTCCTCCTGGGGTTGGTGGAGGGCGTGTGGTTGGAGATGCCAACCTTGATACTTACGAGGTGATTACAGCTGAGAAAGCAATTGATGAGAACAATGTTGGCAATAGGATGCTCCGCAACATGGGATGGCAGGAAGGCTTGGGACTAGGGAAGGATGGAAGTGGAATGACAGAGCCTGTGCAGGCACAAGCCACAGAAAGTAGAGCAGGACTTGGAAGTCAGCAGAAAAAGTTGGATCCTACCCTCGAGGTGCAGGCAGGGGATAGTTACAAGACACTTATTCATAAGAAAGCACTCGCCAGGTTTTGGGAAATGTCGTAA 3207 0.4568 MDPARYGLHQGWDNNSALEGYGAVHEPNFRVGGSYNERRFIDERYSRDNIYQRNAIHRDVLDRDAYPPSGPAVGHWSESKRRGYDEDYPLDRESRRLERPYYDTYHQVDAFRDCEVDTYPEFDKFRDGYASIENYGDRGYDKAGRFGELDRDDYAYDDYGYRSRASHYHREDSYERDYDHGQHSYDSDYGRGSRRDSNWRRRESRDREHDKKSLSRERDLSPQRRHERSHSRSRSRSRSHSHSRSRSQSHGYDDRPRSRSPRGRSHGRSYREDSYADSRYERSEKRRDREEKRREHFSVAPSATVVVKGLSQNANEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAARAMMDKLGDAGLVVDGRKLFFEYSSKPTGGPGGPFGQEGSMRSGHNHKSITVPSDWMCTICGYINFARRTSCYQCNEPRSEDAPAADITLSNPTALGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTLEKNGQILRVAYAKSILGPGSGTSGPSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDNKQSTGQEQTGTEVGAQKDALAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHQTLQYIPCTDQNENKAPNNQSESSKASDGSSSKKVVISAPATTVTSAERPTSLADAVQAAATAAIAAEKKEKEKLKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQQAVSVDDRSLSGYSTKSKFKNEATAARENNTSSSGIPTAPTTQSVALDSQVQPRPVSNSLGGTLMGVIRGSGRGIGKSDTYSVPTAAAAACTSRSSTNVDASTVATPFRTDVSALGSYTSPVAAGSGRRRFSEMPHSASTPKEQPQSTYRDRAAERRSLYGSSSSVGDDLTDLETGDSNRDFASRKGDPMPFPPGVGGGRVVGDANLDTYEVITAEKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMTEPVQAQATESRAGLGSQQKKLDPTLEVQAGDSYKTLIHKKALARFWEMS 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1853 1068 MobiDBLite consensus disorder prediction 173 297 - -
Glsi10g1853 1068 MobiDBLite consensus disorder prediction 791 830 - -
Glsi10g1853 1068 SMART rrm1_1 304 379 IPR000504 GO:0003723
Glsi10g1853 1068 SMART rrm1_1 465 540 IPR000504 GO:0003723
Glsi10g1853 1068 MobiDBLite consensus disorder prediction 227 245 - -
Glsi10g1853 1068 MobiDBLite consensus disorder prediction 62 85 - -
Glsi10g1853 1068 MobiDBLite consensus disorder prediction 586 602 - -
Glsi10g1853 1068 ProSitePatterns Zinc finger RanBP2-type signature. 413 432 IPR001876 -
Glsi10g1853 1068 SMART zf_4 411 435 IPR001876 -
Glsi10g1853 1068 Gene3D - 407 439 - -
Glsi10g1853 1068 SUPERFAMILY RNA-binding domain, RBD 232 381 IPR035979 GO:0003676
Glsi10g1853 1068 SUPERFAMILY Ran binding protein zinc finger-like 403 439 IPR036443 -
Glsi10g1853 1068 MobiDBLite consensus disorder prediction 582 606 - -
Glsi10g1853 1068 Pfam OCRE domain 612 660 IPR041591 -
Glsi10g1853 1068 MobiDBLite consensus disorder prediction 791 834 - -
Glsi10g1853 1068 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 464 544 IPR000504 GO:0003723
Glsi10g1853 1068 CDD OCRE_SUA_like 610 661 IPR035623 -
Glsi10g1853 1068 ProSiteProfiles Zinc finger RanBP2 type profile. 409 438 IPR001876 -
Glsi10g1853 1068 MobiDBLite consensus disorder prediction 246 297 - -
Glsi10g1853 1068 Gene3D - 454 605 IPR012677 -
Glsi10g1853 1068 Gene3D - 268 406 IPR012677 -
Glsi10g1853 1068 ProSiteProfiles G-patch domain profile. 992 1038 IPR000467 GO:0003676
Glsi10g1853 1068 SMART G-patch_5 990 1036 IPR000467 GO:0003676
Glsi10g1853 1068 Pfam G-patch domain 993 1034 IPR000467 GO:0003676
Glsi10g1853 1068 MobiDBLite consensus disorder prediction 929 943 - -
Glsi10g1853 1068 MobiDBLite consensus disorder prediction 173 226 - -
Glsi10g1853 1068 MobiDBLite consensus disorder prediction 663 687 - -
Glsi10g1853 1068 CDD RRM1_RRM2_RBM5_like 462 542 - -
Glsi10g1853 1068 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 383 IPR000504 GO:0003723
Glsi10g1853 1068 MobiDBLite consensus disorder prediction 889 965 - -
Glsi10g1853 1068 PANTHER RNA-BINDING PROTEIN 194 1064 - -
Glsi10g1853 1068 MobiDBLite consensus disorder prediction 1014 1037 - -
Glsi10g1853 1068 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 466 532 IPR000504 GO:0003723
Glsi10g1853 1068 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 365 IPR000504 GO:0003723
Glsi10g1853 1068 MobiDBLite consensus disorder prediction 1020 1037 - -
Glsi10g1853 1068 SUPERFAMILY RNA-binding domain, RBD 462 552 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1853 Glsi-ChrGlsi10 12894154 12902028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1853 302 528 Eukaryotic Initiation Factors Gene Family AT2G36660 25.197 2.42e-09 59.3