Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1849 ATGGCGATGTTGTTGAAGAAAGTATGGGAATCGGTGTCCAATCGTTCGAGTTCGAGTTCGAGTTCGAGTTCCAACTCAACATTACGTGTTTGTTGGGTGGAATCACCATTGGGTGCATTCGAGCAAATTCCTCCCGACATATTTATCCAAATCCTGCGACTTCTGGGTCCAAAAGAAGCTGCAAAATTGAGTCTTGTATGCAAAGCATGGAGATCGCTGGTCTTCGATAATCGCCTCTGGATTTACTTCCTTCAGAACCACCAGCCGGAGTCATGGGATTCCGTTTTTTTCGCGGAGACCAATTTGAGGTCCGGTTACCCTCTTCAAACCTTCATTGGTCAGATGCCTCAGTTATCTTTCAAGAGTATATATGGCCAACGAGCACAAGTTCCTGGTTCTGTTATAATCGATGGAGGTTCTGGCTATTGCAAGTTTGGTTGGAGCAAATACGCATGTCCATCAGGACGATCGGCAACCTTTTTGGAATTCGGTAACATTGAGTCTCCAATGTACGCTAGACTTCGACATTTTTTTGCAACTATTTATAGCAGGATGCAGGTGAAACCAAATGCTCAACCAGTCATTGTTTCTATACCAATATGTCACTATGACGATACTGAATCTGCCAAAGCATCAAGACGGCAGCTTAAGGAGGCAATCTATGCTACCTTGTTTGACATGAATGTTCCTGCTATTTGTACAGTCAACCAGGCCGCTTTAGCTCTATATGCTGCAAAAAGAACTTCTGGAATAGCTGTTAATATTGGTTTTCAGGTCACATCTATAGTCCCAATTCTAAATGGTAAAGTTATGCGCAAGGTGGGTGTGGAAGTGGTGGGACTGGGAGCACTAAAACTTACAGGATTCCTTAGGGAGCTGATGGAACAGAACAACATGAATTTTGAATCTTTGTACACTGTTCGCACACTAAAAGAGAAGCTTTGTTATGTTGCTATTGATTATGAAGCTGAGCTATTAAAAGATACACAAGCATCGTTTGAAGTTGCAGGAGAAGGATGGTTTACACTGTCAAAAGAGCGGTTTAAAACAGGAGAGATCTTGTTCCAGCCTCGTCTTGCTGGATTGCAAGCAATGGGTTTGCCCCAGGCCGTAGCTCTTTGTATGGATCATTGTCATTCTGCAGAATTGGCAGGTGACACTGACTGGTTTAAGACTGTAGTTTTATCAGGGGGGACTGCATGTCTACCAGGTCTGGCAGGAAGGTTAGAGAAGGAACTCCATGAGCTACTTCCTCCCTATGTGTCTAATGGAATCAGAGTCATACCTCCTCCATATGGTGCGGATACTGCATGGTTTGGTGCGAAGACCATTGGCAATTTGAGCACCTTTCCTGGTCCCTGGTGTATAAAAAAGAAGCACTTCCGCCCGAAGTCTAGATTCAATCTCATTTGGTGA 1416 0.44 MAMLLKKVWESVSNRSSSSSSSSSNSTLRVCWVESPLGAFEQIPPDIFIQILRLLGPKEAAKLSLVCKAWRSLVFDNRLWIYFLQNHQPESWDSVFFAETNLRSGYPLQTFIGQMPQLSFKSIYGQRAQVPGSVIIDGGSGYCKFGWSKYACPSGRSATFLEFGNIESPMYARLRHFFATIYSRMQVKPNAQPVIVSIPICHYDDTESAKASRRQLKEAIYATLFDMNVPAICTVNQAALALYAAKRTSGIAVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLRELMEQNNMNFESLYTVRTLKEKLCYVAIDYEAELLKDTQASFEVAGEGWFTLSKERFKTGEILFQPRLAGLQAMGLPQAVALCMDHCHSAELAGDTDWFKTVVLSGGTACLPGLAGRLEKELHELLPPYVSNGIRVIPPPYGADTAWFGAKTIGNLSTFPGPWCIKKKHFRPKSRFNLIW 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1849 471 Gene3D Actin; Chain A, domain 4 281 364 - -
Glsi10g1849 471 ProSiteProfiles F-box domain profile. 37 83 IPR001810 GO:0005515
Glsi10g1849 471 SMART actin_3 131 461 IPR004000 -
Glsi10g1849 471 SUPERFAMILY F-box domain 37 99 IPR036047 GO:0005515
Glsi10g1849 471 PANTHER ACTIN 174 460 IPR004000 -
Glsi10g1849 471 Pfam Actin 180 458 IPR004000 -
Glsi10g1849 471 CDD F-box_AtARP8-like 39 83 - -
Glsi10g1849 471 SUPERFAMILY Actin-like ATPase domain 247 460 IPR043129 -
Glsi10g1849 471 SUPERFAMILY Actin-like ATPase domain 133 253 IPR043129 -
Glsi10g1849 471 Gene3D - 238 436 - -
Glsi10g1849 471 Pfam F-box-like 41 80 IPR001810 GO:0005515
Glsi10g1849 471 Gene3D - 176 459 - -
Glsi10g1849 471 Gene3D - 35 106 - -
Glsi10g1849 471 CDD NBD_sugar-kinase_HSP70_actin 134 278 - -
Glsi10g1849 471 SMART fbox_2 43 83 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1849 Glsi-ChrGlsi10 12857798 12870361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1849 180 460 Cytoskeleton Gene Families AT3G12110 31.379 2.99e-39 144