Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1844 ATGGCCATCGTCATCAATAGCACTGACAAAATTTTCTGCTGCATTTGTTGTGGCGATCTGGTCAGAAATATACTACTCAAGAGGTTCCAATTTCAAGTTGTAGTATTTCTTGCTGTTGCTTGCTTCTTTTGGGCAAGAAAAGTACCCTGCTTGGTTCCTGAGAGATATCTAATAAGTCTGGTGATTTCTAGCTTCTTGGGTTGGGATGATTCTATCACCGATCCCACTGAAGTTGGCGCATTGAAAGCCATCAAGGGAAGTTTGATTGATCCTAACAGAAATCTGAGCAACTGGAATCGTGGAGACCCATGTAAATCTAACTGGACAGGGGTTTTATGCTTCAATAAAACATTAGTTGATGGCTATCTGCATGTTCAACAATTGCAACTATTCGGTATGAATTTTTCTGGAACTTTGGCACCAGAGATTGGCAGCTTATCTTATGTGCTAATATTGAGTTTTATGTGGAACAACATAAGTGGGAGTATACCAAAGGAAATTGGCAATATCCAAACTTTGGAACTCTTGCTCTTGAATGGAAATCAATTAACAGGTCATCTGCCAGAAGAGCTTGGTTATCTTCCAAACTTGAACAGAATACAAATTGATCAGAACCACATATCAGGACCTTTACCTACATCATTTGCAAACCTGAACAAGACAAAGCACTTTCACATGAACAACAATTCAATTAGTGGGCAAATCCCACCAGAGCTTTCCCGCTTGCCAAGTCTTGTTCACCTCCTTCTTGACAACAACAACTTATCAGGATATCTTCCCCCTGAGCTCTCCAAGATGCCAAACCTACTTATAATTCAACTTGATAACAATAACTTCGGTGGGAATACCATTCCAGATTCTTATGCCGACATGTCGAAATTGTTGAAAATGAGCCTTAGGAATTGCAACTTGCAAGGACCAATTCCTGATTTAAGCAGGATACCTGACCTTGGTTATCTTGACCTCAGTTCCAATCAGTTGAACGGATCAATTCCTCCTAAAAAGCTTTCTGGCAATATCACAACTATCAATTTATCAAACAACAAGCTTATTGGAACTATTCCATCCTATTTTTCTGAACTTCCGCTTCTTCAGAAATTGTCAATTGCAAACAATTCTTTGAATGGCAGTGTTCCTTCAGTTATTTGGCAGAGCAGGACCTTAAATGGAACAGAAAGATTTCTCTTGGAGTTTCAAAATAATAATTTCACAAGCATAACAGGCAGCACTAGCCTTCCTCCAAATGTCTCACTCTGGTATCCTTCTAAACTTATTTTGCTGCTTGAGGGAAATCCTCTATGTTCAAATGACAGCGTAGTTCAGTTCTGTCGATCTGAAAGTGCCAATGACACCGACAATCTGGTTCCAACTAACTCCAGTCTTAGCTGTCCCATTCAAGCGTGCCCCTCTCCTTATGAGTATTCTAAAACATCTCCTGTGAAGTGTTTCTGTGCAGCCCCTTTGCTGATTGAATATCGGTTGAAAAGTCCTGGATTTATAGATTTTCGTCCATATGAGAGATGGTTAATTCCTGACAGTGATGTGTTCGGGCCTTATGAGCTGCTTGGTCTTACTCTCCTGGATCCTTACAAGGATGTGATTGAAACCTCGAAAAGTTCAAGAATAAGCACGGCTGCACTGGTTGGCATAATAGTGGGGGCGATTGCTTGTGCAGTTACATTATCTGCAGTTGTTAGTCTTATTATATTCAGAGTGCTCATGAGAGACCACCGTGCAATTTCAAAACGACGTCACACATCAAAGATTTCGATAAAAATTGATGGTGTGAAGGCCTTTACTTATGGAGAAATGGCACAGGCTACTAACAATTTTGGCGACTCTGCACAAGTTGGTCAAGGGGGTTATGGGAAGGTCTATAAAGGTATTCTTGCTGATGGCACTGTTGTTGCCATAAAACGTGCACAGGAGGGATCATTGCAAGGTGAGAGGGAGTTCCTAACAGAAATACAATTCCTATCCAGGTTACATCATCGCAACCTTTTGTCTTTGATTGGATACTGTGATGAAGAAGGTGAACAGATGCTGGTTTATGAATTTATGCCAAATGGCACACTAAGGGATCATCTTTCTGGTAAAGAACCTCCAAATTTTGCTATGAGATTGAGGATTGCACTAGGGTCAGCAAAGGGTATTCTATATCTACATACAGAAGCTGATCCACCAGTATTCCACCGAGATGTCAAGGCCAGCAACATATTGTTGGATTCTAAATTCACTGCAAAAGTTGCTGATTTTGGACTTTCACGGCTTGCCCCTGTTCCAGATATTGAAGGAAATGTGCCTGCTCATGTATCTACAGTGGTAAAGGGGACCCCGGGTTACCTTGATCCAGAATACTTCTTAACTCATAAGCTGACTGACAAAAGTGACGTCTATAGTCTTGGTGTTGTATTTCTGGAACTCTTGACAGGGATGCAACCAATCTCACATGGCAAAAATATTGTCAGAGAGGTTAATGTTGCATGTCAATCTGGTATAATCTTCTCAGTTATTGATGGAAGTATGGGGTCTTATCCTTCTGAGTATGTTGAGAAATTTGTGACTTTGGCCTTAAAGTGTTGCCAAGATGAGCCAGATGCGCGGCCTAACATGGCAGAAGTGGTTCGGGAGCTCGAAAACATATGGTTTATGATGCCTGAGTCTGATACCAAGAGAGCAGGATCTGTAACCACCAGTGATTCTGGAAAAATAGTCAGTTCATCATCATCCTCTACTATAAAGACACCCTATATATCGGCAGATGTGTCGGGGAGTGACCTTGTTAGTGGAGTAATGCCAACCATCACGCCAAGATAG 2817 0.4125 MAIVINSTDKIFCCICCGDLVRNILLKRFQFQVVVFLAVACFFWARKVPCLVPERYLISLVISSFLGWDDSITDPTEVGALKAIKGSLIDPNRNLSNWNRGDPCKSNWTGVLCFNKTLVDGYLHVQQLQLFGMNFSGTLAPEIGSLSYVLILSFMWNNISGSIPKEIGNIQTLELLLLNGNQLTGHLPEELGYLPNLNRIQIDQNHISGPLPTSFANLNKTKHFHMNNNSISGQIPPELSRLPSLVHLLLDNNNLSGYLPPELSKMPNLLIIQLDNNNFGGNTIPDSYADMSKLLKMSLRNCNLQGPIPDLSRIPDLGYLDLSSNQLNGSIPPKKLSGNITTINLSNNKLIGTIPSYFSELPLLQKLSIANNSLNGSVPSVIWQSRTLNGTERFLLEFQNNNFTSITGSTSLPPNVSLWYPSKLILLLEGNPLCSNDSVVQFCRSESANDTDNLVPTNSSLSCPIQACPSPYEYSKTSPVKCFCAAPLLIEYRLKSPGFIDFRPYERWLIPDSDVFGPYELLGLTLLDPYKDVIETSKSSRISTAALVGIIVGAIACAVTLSAVVSLIIFRVLMRDHRAISKRRHTSKISIKIDGVKAFTYGEMAQATNNFGDSAQVGQGGYGKVYKGILADGTVVAIKRAQEGSLQGEREFLTEIQFLSRLHHRNLLSLIGYCDEEGEQMLVYEFMPNGTLRDHLSGKEPPNFAMRLRIALGSAKGILYLHTEADPPVFHRDVKASNILLDSKFTAKVADFGLSRLAPVPDIEGNVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNVACQSGIIFSVIDGSMGSYPSEYVEKFVTLALKCCQDEPDARPNMAEVVRELENIWFMMPESDTKRAGSVTTSDSGKIVSSSSSSTIKTPYISADVSGSDLVSGVMPTITPR 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1844 938 SUPERFAMILY Protein kinase-like (PK-like) 596 893 IPR011009 -
Glsi10g1844 938 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 234 336 - -
Glsi10g1844 938 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 687 894 - -
Glsi10g1844 938 Pfam Protein kinase domain 614 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1844 938 Gene3D Ribonuclease Inhibitor 229 336 IPR032675 -
Glsi10g1844 938 Gene3D Ribonuclease Inhibitor 75 228 IPR032675 -
Glsi10g1844 938 Gene3D Transferase(Phosphotransferase) domain 1 687 897 - -
Glsi10g1844 938 ProSitePatterns Protein kinases ATP-binding region signature. 617 639 IPR017441 GO:0005524
Glsi10g1844 938 ProSiteProfiles Protein kinase domain profile. 611 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1844 938 Pfam Leucine rich repeat 195 255 IPR001611 GO:0005515
Glsi10g1844 938 ProSitePatterns Serine/Threonine protein kinases active-site signature. 729 741 IPR008271 GO:0004672|GO:0006468
Glsi10g1844 938 PANTHER RECEPTOR-LIKE PROTEIN 55 85 881 - -
Glsi10g1844 938 SUPERFAMILY L domain-like 87 447 - -
Glsi10g1844 938 Gene3D Phosphorylase Kinase; domain 1 581 686 - -
Glsi10g1844 938 SMART serkin_6 611 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1844 938 CDD STKc_IRAK 617 881 - -
Glsi10g1844 938 Gene3D Ribonuclease Inhibitor 337 418 IPR032675 -
Glsi10g1844 938 Pfam Leucine rich repeat N-terminal domain 76 113 IPR013210 -
Glsi10g1844 938 FunFam Leucine-rich repeat protein kinase family protein 575 686 - -
Glsi10g1844 938 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 75 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1844 Glsi-ChrGlsi10 12802227 12816282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1844 51 891 Receptor kinase-like Gene Family AT5G01950 54.635 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Glsi10g1844 Pkinase 1.5e-44 CL0016