LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi10g1843	ATGCTTATATACCAGGCGCAATTGCTTTTCCTTAGAAAAGATGAAGTGGGGATGAAGAAAATGGGAGTACTGGCTCAGAAAATCCTTCTTCCTTTAAGGTTCGTTAGGCCACATTTTTCATTTGAGTATGGTGTTGTTAGCAACATTTAAAAGCAGTTCAAGGAACACAAGAATGTCTTTGCTGTTGGTTGTCCAAATTTTGATAATTTAAATGAGACTTCAGCTGTTGTGTCTGATACAGGTCCTACTGATAGCATTCAACATTTATCGCCTGTGGCAAAGTCCATGCAACATCATCCAAAACCTAAATCAAAGAGTAATGGTCTAGTACTAGAACTAAGACGTTCTTCTCGCGTGCGAAATTCAGTTCCTTCGTATCGTGATGATGTTGGCATAGACCTTTCACCTTCACGGAAGAGGTTCAGGTCTTCTTCATCAGCATGGGGAAGTTATGTTGCAAGGCCACTAGATGAACTCAAAGAAGCTACAGAAGAAGAAAGAAATCGTGCTTTTGAGGCTGCAGAGGCACTCCAAAGCAATTTGGATTCTTCAAATCCATCATTTATTAAGTCAATGGTCCGGTCTCATGTTTATAGCTGCTTTTGGTTGGGTCTGCCTACTAGATTTTGTGAGGAACATCTTCCAAAGACAATATGTGACATGGTTTTAGAGGATGAAAATGGCTCAGAATATGAGGCTGTTTTCATTGGCAATAGAACTGGGCTTAGCGGAGGCTGGAGGGCATTTGCATTGGATCATAAGTTGGATGATGGTGATGCTCTTGTTTTTGAATTAATTGAACCAGCTCGATTCAAGATTTATATTATTAAAGCCTTTCCAGATTCAGTTGAAGATGGACAGGAAATTTCAGAGGAAGAAGGAAATACTAGTGCAACCAAGAAGCAGGAAAAGCAATCAAACAAGACACAAAAGCAGAAACAAGGTATTGTGCATGAAACTAATGAATCAGCAAGTTCTCAGGAGCATCTACCAGAAAGTAATGTTGACAATGAAGTTGAGCCTCAGGCGGTAAACCCAGCCAAGAAGACTAGATTTTCTCTGAGAAAATTGCAAAAGGAATCGAAAGATGCTAAAATTGCAAAAGCAACCAAGAAGCAGGAAAAGCAGTCAAACATGACACAAAAGCAGAAACAAGGTATTGTGCATGAAACTAATGAATCAGCGAGTTCTCAGGAGCATCTAGCAGAAAGTAATGTTGACAATGAAGTTGAGCCACAGGCGGTAAACCCAGCCAAGAAGACTAGATTTTCTCTGAGAAAATTGCAAAAGGAATCGAAAGATGCTAAACTGCCTGATGCTGATGATTCAAAAAGGGAAGGGCATATTGAAGAAGGGAAAAATTGTGCAACTGAGAAACCAAATGCAGCTGTGAAACATAAATCTCAGGCAAACAAGACAATGAAGTCAAAAAATGGTATTTTACATGAAAATGGTGATTCCACAAGTACTCAGCAGCCAGAAAGTAACCTTGAAAACGAAGCCAAAACAAGTGTGGATAGCCCTAATAAGCAGAATGGATTGGTTGAGCATGCTGATAGTGATTTGAAGAAAGTTGAACCAGTTGAAGAAGCAGGCGAAGGTGCTTCACAAAAATCAAGAAAAAAACGAGCTCCAAAGCTTTTCAGAAAGAAAGCATAA	1659	0.396	MLIYQAQLLFLRKDEVGMKKMGVLAQKILLPLRFVRPHFSFEYGVVSNIXKQFKEHKNVFAVGCPNFDNLNETSAVVSDTGPTDSIQHLSPVAKSMQHHPKPKSKSNGLVLELRRSSRVRNSVPSYRDDVGIDLSPSRKRFRSSSSAWGSYVARPLDELKEATEEERNRAFEAAEALQSNLDSSNPSFIKSMVRSHVYSCFWLGLPTRFCEEHLPKTICDMVLEDENGSEYEAVFIGNRTGLSGGWRAFALDHKLDDGDALVFELIEPARFKIYIIKAFPDSVEDGQEISEEEGNTSATKKQEKQSNKTQKQKQGIVHETNESASSQEHLPESNVDNEVEPQAVNPAKKTRFSLRKLQKESKDAKIAKATKKQEKQSNMTQKQKQGIVHETNESASSQEHLAESNVDNEVEPQAVNPAKKTRFSLRKLQKESKDAKLPDADDSKREGHIEEGKNCATEKPNAAVKHKSQANKTMKSKNGILHENGDSTSTQQPESNLENEAKTSVDSPNKQNGLVEHADSDLKKVEPVEEAGEGASQKSRKKRAPKLFRKKA	552

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi10g1843	552	MobiDBLite	consensus disorder prediction	353	378	-	-
	Glsi10g1843	552	MobiDBLite	consensus disorder prediction	294	308	-	-
	Glsi10g1843	552	MobiDBLite	consensus disorder prediction	424	455	-	-
	Glsi10g1843	552	ProSiteProfiles	B3 DNA-binding domain profile.	188	279	IPR003340	GO:0003677
	Glsi10g1843	552	Coils	Coil	354	374	-	-
	Glsi10g1843	552	MobiDBLite	consensus disorder prediction	516	540	-	-
	Glsi10g1843	552	SMART	B3_2	188	279	IPR003340	GO:0003677
	Glsi10g1843	552	MobiDBLite	consensus disorder prediction	78	92	-	-
	Glsi10g1843	552	Pfam	B3 DNA binding domain	188	275	IPR003340	GO:0003677
	Glsi10g1843	552	MobiDBLite	consensus disorder prediction	464	514	-	-
	Glsi10g1843	552	MobiDBLite	consensus disorder prediction	286	552	-	-
	Glsi10g1843	552	Gene3D	-	162	279	IPR015300	-
	Glsi10g1843	552	MobiDBLite	consensus disorder prediction	78	110	-	-
	Glsi10g1843	552	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED	99	278	IPR044837	-
	Glsi10g1843	552	MobiDBLite	consensus disorder prediction	309	332	-	-
	Glsi10g1843	552	MobiDBLite	consensus disorder prediction	379	403	-	-
	Glsi10g1843	552	CDD	B3_DNA	186	277	IPR003340	GO:0003677
	Glsi10g1843	552	SUPERFAMILY	DNA-binding pseudobarrel domain	181	277	IPR015300	-
	Glsi10g1843	552	Coils	Coil	156	180	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi10g1843	Glsi-ChrGlsi10	12790486	12797345	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi10g1843	94	278	B3 DNA Binding Superfamily	AT5G58280	56.989	5.67e-64	209

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Glsi10g1843		B3	1.3e-15	CL0405