Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1839 ATGCTTGCTGCGGCTTCTTCTTTTGCTTCCAAACGCGTTCGTGCTTCGGAGCTTCTTCAACGCAATGGTAGACCCGGGATAGTATCACAACGTGCCATTGCCATAAGTTTTTTTGAACCTTCTGCTAGTGTTGATTTGAGTAGGAATAATGGGAGTTGCCGTCAAGTTCGATCCTTTTCCGTGGTCTCTGGGATCAGCACCTGCCCACCTCGCAGTAGAATTAGAAGAGATGACTTCAGTTTTAATCCGAGTGCTCCCAGAAGATGTCCAAGTTTGCTTTATAGTATAAAGGGGTTTCTTTCTGATTCATCAACTTCAAATTCCTCTTCTCCACTATATAGCAGAATAACCAGACCTTGCTTTCCGCAGGTCAGTTCACCGCTAGACGGGCGAGCATTGTTCTCAACTTCAACTAAAACTGATGATGGAACGACCTCAAGGCAGATTGAGACCCAGAACCAAAAAACTACTGCCACAATTGCTAAAGCACCTTCAGGTGAACAAGTTGCTGACATAAAAATCCTCCGTACCCTTGCCAGTTACTTGTGGATGAAAGATAATATTGAATTCCGATTCCGAGTTATTGCTGCTTTGGGTTTTCTTGTTGGTGCTAAGGTTCTGAATGTTCAAGTCCCTTTCTTATTCAAGCTTGCAATTGATTGGTTGACGACTGCCACAGGCAATGCTAGTGCTCTTTCTTCTTTTACAGCCGCAAATTCAACTCTGGTGGCTCTTTTTGCAACCCCAGCGGCTGCGTTAATTGGATATGGAATTGCACGTTCAGGAGCTTCTGCTTTCAATGAACTGCGTACTGCTGTATTCTCCAAGGTAGCACTGCGAACAATTCGATCAGTATCAAGAAAGGTGTTCTCACATTTGCACGACCTTGACCTTCGGTATCATCTAAGTCGAGAAACTGGAGCATTAAATAGAACAATTGATCGTGGTAGTCGCGCTATAAATTTCATTCTCTCATCTATGGTGTTCAATGTTGTACCCACCATATTAGAGATATCTATGGTATCAGGTATACTGGCCTACAAATTTGGAGCACCTTTTGCGTGGATCACATCCCTATCAGTTGCTGCTTATGTTATTTTTACACTGACTACCACACAGTGGAGGACTAAGTTCAGGAAGGCCATGAATAAAGCTGATAATGATGCAAGTTCCAGGGCAATTGATTCACTCATTAATTATGAGACTGTCAAATATTTCAATAATGAAGGTTTTGAAGCTGAAAAATATGATGAGTACCTGAAGAGGTATGAAGATGCTGCTCTGAAAACACAACGTAGCCTTGCTTTTCTGAACTTTGGTCAAAATGTTATATTTAGTACTGCTCTTTCTACGGCAATGGTGCTGTGTTCTCATGGGATTATGAATGGCCAGATGACTGTCGGTGATTTGGTGATGGTGAATGGGCTTCTCTTCCAACTATCGCTTCCACTCAATTTCCTTGGTAGTGTTTATCGTGAGACTATACAGAGTTTAGTTGACATGAAGTCCATGTTTCAGTTACTGGAGGAAAGAGCAGATGTTAGGGATAAAGAGAATGCAAAGCCTCTGAGGTTAAATGGAGGGAGCATCCAGTTTGAAAATGTACACTTCAGTTACCTTACAGAAAGAAAGATACTTGATGGAATATCTCTTGTTGTACCAGCTGGGAAAAGTGTGGCAATTGTTGGGACAAGTGGAAGTGGAAAATCAACCATTCTTCGATTGCTCTTCAGGTTCTTTGATCCTCATTCTGGAAGTATAAAGATAGATGGTCAAAATATCCAAGAGGTAACCCTCGATAGTCTACGGAAGGCTATTGGTGTTGTTCCACAAGATACTGTACTTTTCAATGATACTATATTTCACAACATTCACTATGGTCGACTTTCGGCTACTAATGAGGAGGTCTATGAAGCTGCTCGACAAGCGGCAATTCATGACTCTATCATGAATTTTCCTGAGAAATATTCAACTGTTGTGGGAGAACGAGGACTCAAGTTAAGTGGTGGTGAGAAGCAACGTGTTGCCTTAGCACGTGCATTTTTGAAAGCACCTGCAATTATGTTGTGCGATGAAGCTACAAGTGCGCTTGACAGCACAACAGAAGCAGAGATTTTAAGTGCATTGAAATCTTTAGCAAACAATCGAACTTCCATATTCATAGCTCACAGGCTTACCACGGCAATGCAGTGTGATGAGATCATAGTCTTGGAAAATGGTAAGGTGATTGAACAAGGACCACATGAACTGCTCTTATCAAAGGCAGGGAGATATGCACAGCTATGGGCACAGCAAAACAACACAGTGGATGCAATTGATACAGCCATCAAAGCGGGGGCATAA 2343 0.4217 MLAAASSFASKRVRASELLQRNGRPGIVSQRAIAISFFEPSASVDLSRNNGSCRQVRSFSVVSGISTCPPRSRIRRDDFSFNPSAPRRCPSLLYSIKGFLSDSSTSNSSSPLYSRITRPCFPQVSSPLDGRALFSTSTKTDDGTTSRQIETQNQKTTATIAKAPSGEQVADIKILRTLASYLWMKDNIEFRFRVIAALGFLVGAKVLNVQVPFLFKLAIDWLTTATGNASALSSFTAANSTLVALFATPAAALIGYGIARSGASAFNELRTAVFSKVALRTIRSVSRKVFSHLHDLDLRYHLSRETGALNRTIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVAAYVIFTLTTTQWRTKFRKAMNKADNDASSRAIDSLINYETVKYFNNEGFEAEKYDEYLKRYEDAALKTQRSLAFLNFGQNVIFSTALSTAMVLCSHGIMNGQMTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLVDMKSMFQLLEERADVRDKENAKPLRLNGGSIQFENVHFSYLTERKILDGISLVVPAGKSVAIVGTSGSGKSTILRLLFRFFDPHSGSIKIDGQNIQEVTLDSLRKAIGVVPQDTVLFNDTIFHNIHYGRLSATNEEVYEAARQAAIHDSIMNFPEKYSTVVGERGLKLSGGEKQRVALARAFLKAPAIMLCDEATSALDSTTEAEILSALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGPHELLLSKAGRYAQLWAQQNNTVDAIDTAIKAGA 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1839 780 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 175 761 IPR039421 -
Glsi10g1839 780 CDD ABC_6TM_ATM1_ABCB7 197 504 - -
Glsi10g1839 780 ProSitePatterns ABC transporters family signature. 667 681 IPR017871 GO:0005524|GO:0016887
Glsi10g1839 780 Gene3D - 521 776 IPR027417 -
Glsi10g1839 780 SMART AAA_5 555 741 IPR003593 GO:0016887
Glsi10g1839 780 SUPERFAMILY ABC transporter transmembrane region 189 509 IPR036640 GO:0005524|GO:0016020
Glsi10g1839 780 FunFam ATP-binding cassette sub-family B member 7 166 518 - -
Glsi10g1839 780 Pfam ABC transporter transmembrane region 195 483 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi10g1839 780 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 195 496 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi10g1839 780 FunFam ABC transporter B family member 25 522 776 - -
Glsi10g1839 780 Gene3D ABC transporter type 1, transmembrane domain 181 520 IPR036640 GO:0005524|GO:0016020
Glsi10g1839 780 CDD ABCC_ATM1_transporter 530 765 - -
Glsi10g1839 780 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 519 765 IPR027417 -
Glsi10g1839 780 Pfam ABC transporter 546 695 IPR003439 GO:0005524
Glsi10g1839 780 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 530 764 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1839 Glsi-ChrGlsi10 12747643 12759548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1839 366 766 Calmodulin-binding Proteins AT2G36910 36.650 3.45e-65 234
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1839 10 12747643 12759548 Glsi10g1839 10 12747643 12759548 ECH