Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1805 ATGAAGCTTTCAACGTCAGGGTTGGGTCAGCAGGGAAATGAAGGGGAGAAAAAGTGTTTGAATTCGGAACTATGGCATGCGTGCGCGGGTCCCCTGGTCTCCCTACCAACCGCGGGTACTCGTGTGGTTTACTTTCCTCAAGGTCATAGCGAGCAGGTTGCTGCCACAACTAATAGGGAAGTTGATGGGCACATACCTAACTACCCAAGCTTGCCACCCCAGTTGATTTGCCAACTTCATAATGTCACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACTCTACAGCCATTGACTCTGCAAGAGCAGAAGGAAACATTTCTTCCTATGGAACTGGGCATACCAAGTAGGCAGCCCTCAAATTATTTTTGCAAGACATTAACAGCAAGTGATACCAGCACACATGGAGGATTTTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACAGCAACCACCAGCACAAGAACTAATCGCTAAGGATCTTCATGATGTTGAGTGGAAGTTTCGACACATTTTTCGGGGTCAGCCAAAACGGCATCTTCTTACAACAGGCTGGAGTGTATTTGTTAGTGCCAAGAGACTTGTGGCTGGAGATTCTGTCCTTTTCATATGGAATGAAAAGAATCAGCTCCTTTTGGGAATACGTCGTGCTTGTCGACCACAAACTGTGATGCCTTCATCAGTTCTGTCGAGTGATAGCATGCACATTGGACTGCTTGCAGCTGCTGCTCATGCTGCTGCAACTAATAGCTGTTTTACTGTCTTCTATAATCCAAGGGCTAGTCCATCTGAGTTTGTTATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGCGTTTCCGTTGGTATGCGTTTTAGGATGCTATTTGAGACCGAAGAGTCAAGTGTCCGCAGGTTCATGGGTACGATAACTGGCATAAGTGATCTGGATCCTGCTCGTTGGCCAAACTCTCATTGGCGATCTGTTAAGGTTGGTTGGGATGAGTCAACAGCAGGTGATAGACAACCCAGGGTATCATTGTGGGAAATTGAGCCTTTGACAACATTCCCAATGTATCCATCACTATTTCCTCTCAGATTGAAACGTCCATGGTATCCTGGCCCCTCATCTATGCATGATGGCAGAGATGAAGCAACTAATGGGCTAATGTGGCTGAGAGGTGGACTGGGTGACCAAAGTCCAAACTCCTTAAATTTTCAAAGTGGTGGTTTGTTGCCTTGGCTGCAGCAGAGATTGGATCCAACTTTGCTAGGAAATGATCATAATCAGCAGTACCAAGCTATGTTGGCAGCTGGTTTGCAGAACCAAGGGAGTGGAGATCTCTATAGGCAACAAATGATGCATTTTCAACAACCTTTCCATTTCCTTCAACAATCAGGAAATCTTAATTCTTTGCAACTTCAGCAGCATCAGCAATCAGTGTCTTCTAATATTCTGCAGCCACAAGCCCAAGTAGTGACAGAAAACCTGTCTCAGAACCTCCTTCAGAAACCACATAGCAATCAGGAAGACCAGGCACAGCAGCAGAATAATGCTTACCATGACACACTTTTGATTCAAAGCGATCTGCTCCATCAGAGGCAACACTCTGATTTGCCTTCACCATCATATTCAAAACCAGATTTCTTAGATTCAAGCATAAAGTTTACTTCATCAGTTTCCCCTGTGCAAAACATGCTTAGTTCACTTTGTCCTGAAGGGAGTGGTAATCTTCTCAACCTATCCAGAACTGGGCAGTCTGCAGAGACTGATCAGTTACCCCAACAATTATGGACTCCAAAGTCTGCACCTGTGCAGGTCAATGCCTTTGGCAACTTGATCTCACATGCACAATTTACTGGAAAAGATTCTGCTTTGGTACCACCACGTTGTGCTTCGGATACCCAAAATCCTACTCTCTTTGGTGTAAATATCGATTCATCTGGACTTCTGCTCCCCACCACTGCCCTTGGTTATACATCTACATCAGTTGAGACTGATACATCAACAATGCAAATGGGGGATTCTGGATTTCAGGGTCCTCTCTATGCTCGCATGCAAGATACGTCAGAGTTGTTGCAAAGTTCTGGGCAAGTTGAGCCACAAAACCAAACCCGGACATTTGTCAAGGTTTACAAATCAGGGTCAGTTGGGCGCTCACTTGATATATCCCGGTTCAGCAGTTATCACGAGCTTCGAGAAGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGATAGGGAGAATGATATTCTTCTCCTTGGCGATGATCCATGGGAATCATTTGTCAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGATATTCAGAAAATGGGAGAGCAAGTGGTCGAATCCCTTGGTCCAAACGCCGGATAA 2442 0.4488 MKLSTSGLGQQGNEGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTLQEQKETFLPMELGIPSRQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIAKDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRACRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRFMGTITGISDLDPARWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWYPGPSSMHDGRDEATNGLMWLRGGLGDQSPNSLNFQSGGLLPWLQQRLDPTLLGNDHNQQYQAMLAAGLQNQGSGDLYRQQMMHFQQPFHFLQQSGNLNSLQLQQHQQSVSSNILQPQAQVVTENLSQNLLQKPHSNQEDQAQQQNNAYHDTLLIQSDLLHQRQHSDLPSPSYSKPDFLDSSIKFTSSVSPVQNMLSSLCPEGSGNLLNLSRTGQSAETDQLPQQLWTPKSAPVQVNAFGNLISHAQFTGKDSALVPPRCASDTQNPTLFGVNIDSSGLLLPTTALGYTSTSVETDTSTMQMGDSGFQGPLYARMQDTSELLQSSGQVEPQNQTRTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDILLLGDDPWESFVNNVWYIKILSPEDIQKMGEQVVESLGPNAG 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1805 813 Pfam AUX/IAA family 706 796 IPR033389 -
Glsi10g1805 813 Gene3D - 291 363 - -
Glsi10g1805 813 FunFam Auxin response factor 125 229 - -
Glsi10g1805 813 ProSiteProfiles PB1 domain profile. 712 796 IPR000270 GO:0005515
Glsi10g1805 813 FunFam Auxin response factor 291 363 - -
Glsi10g1805 813 Gene3D - 125 229 IPR015300 -
Glsi10g1805 813 Gene3D - 708 801 - -
Glsi10g1805 813 FunFam Auxin response factor 707 801 - -
Glsi10g1805 813 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Glsi10g1805 813 SUPERFAMILY DNA-binding pseudobarrel domain 111 256 IPR015300 -
Glsi10g1805 813 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 801 IPR044835 GO:0003677|GO:0006355|GO:0009725
Glsi10g1805 813 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Glsi10g1805 813 SMART B3_2 127 229 IPR003340 GO:0003677
Glsi10g1805 813 SUPERFAMILY CAD & PB1 domains 708 786 - -
Glsi10g1805 813 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Glsi10g1805 813 CDD B3_DNA 126 227 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1805 Glsi-ChrGlsi10 12522653 12531147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1805 97 803 B3 DNA Binding Superfamily AT5G37020 68.289 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi10g1805 AUX_IAA 5.5e-08 CL0072