Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1782 ATGGCACCAGTTTCATTTCCTCCTGGATTCAGGTTCCACCCTACTGATGAAGAACTTGTTGCTTATTATCTCAAAAGAAAAATCAATGGCCGAAAGATTGAGTTAGAGATCATCCCTGAAGTTGATCTCTATAAATGTGAACCATGGGACTTGCCAGGAAAATCATTGTTACCAGGAAAAGATTTGGAGTGGAAAGTGAACTCTCAGAGTAGGGCAGTGGGGATGAAGAAAACCCTAGTTTATTACAGAGGTAGAGCCCCTCATGGTTGTCGCTCTGATTGGGTTATGCATGAGTATCGTCTTGACGAGAGAGAATGTGAAATTGCTTCTGGCTTGCAGGAGGCGTATGCTCTTTGTCGTGTGTTCAAGAAGAGTACAGTGATCACCCCAAAAATTGGAGAGCAATATGTTAGCAGCCATGCAAATATTCAGATGGCTAGTGATCAGTCTTCAAGCATTGAACTATACTCATCTGAAGGAAGAGGTGAAGATTTAGAGAGCTCAAATTATTTTATGCCGCTGGATACTTGCTCTCCCTACATACAAAATAATGGGACAACGTTCAATATCAATAGCACTGGAACAAGAGATCATGGGAATAATTGGTCACAGTTCTTATCAGAAGATCCATTCAGCCTTCCAACTTCTTCTTCATTTCCCAATTATGGAGCCATTTCATACCCTCCATGCAAGGTGGATATAGCTTTAGAGTGCGCCAGGATGCAGCACAGGTTTACTATGCCTCCATTGGAGGTAGAGGACTTCCCTCAAGTTGGGATTTCAGAACTGAAGATGCCACAAGCTTCGGGTGCCATTCATGGAACCAGAAACGATACAGATATTTTGCAGGAAATTCTATCAGTTGCCCATGCTTCTCAGGAACTCGTGAATCAGTCTAACTTTTCACAGACGACATGGGGTTCTGGCAGTGAAATCTATGCTCCTCATCAAGATGACGACTTTAGTTTCATGGTTGGCAGAGACAGTAATAATAGTTTCAACCATGTGAATGATTTGAGTTCCATGAAATCATGCATTGACGACAAACCATGGGAAGATCCAAACCCAATAAGGTCAATAGAGATTGGAGATCTTGATGACGAATTCAAGGCAGAGAGGATGGTAGAGAACTTGAGATGGGTTGGAATGTCAAGCAAACATTTGGAGAAGACCTTTACGGAAGAGCAAAAGATTGTTACCATTGAGGATATCACAAATTTTCAAACAAAGAGGGAAGAGAACGAGGTGCAAGAATCTGAGCAGCATAAAAGCAACAAGGAACTCAACTACTCAAACATGAATGATTTCTCATTGGGGTTCATCAATGATGATGATAACCCAAATGGGAACTTCATAGATGAAGGCACAACCACCATGGATGAATATTATTCAAGTTCCCCAAGCTTTGAGGTAGTTGAGGAAATCAAAGTCAGCCATGGAATGTTTGTGGCAACTCGTCAAGTAGCTGACACATTCTTCCACCAAATTGTTCCTTCACAAACCCTCAAGGTTCACCTCAACCCAGTCATGGCAAACAATCTTTCTATAGAAAATGCAGAGACACAGACACAACTAAGATGGGAGAACAAAGGGTCCTTCTTCAGAAAGCTAATAATAAAGCCATCAAAGACCATAGCTAGTGCTGTTGTGTTCATCTTTGCACTTCTCTTTATGCATTGTGGATATTTGGATGAAGAGCAAGAGAAAGGTTGGTATAGTGATAACAGCATGAGGAAAATAATGAGGCAATCAGAGAAGATCAAATGGAATGAGAAAGAAAAGGTTTGGTTTGTTGGCATCAAGAGTGGAAGAGGATTCAGTGTGGTGTTGAAGAAGATAGGCATTTTCCTTACCATTTCTCTGGCTCTTTGTACCATGTGGGCTAACCACATTATAGTTAATTAA 1905 0.4121 MAPVSFPPGFRFHPTDEELVAYYLKRKINGRKIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWKVNSQSRAVGMKKTLVYYRGRAPHGCRSDWVMHEYRLDERECEIASGLQEAYALCRVFKKSTVITPKIGEQYVSSHANIQMASDQSSSIELYSSEGRGEDLESSNYFMPLDTCSPYIQNNGTTFNINSTGTRDHGNNWSQFLSEDPFSLPTSSSFPNYGAISYPPCKVDIALECARMQHRFTMPPLEVEDFPQVGISELKMPQASGAIHGTRNDTDILQEILSVAHASQELVNQSNFSQTTWGSGSEIYAPHQDDDFSFMVGRDSNNSFNHVNDLSSMKSCIDDKPWEDPNPIRSIEIGDLDDEFKAERMVENLRWVGMSSKHLEKTFTEEQKIVTIEDITNFQTKREENEVQESEQHKSNKELNYSNMNDFSLGFINDDDNPNGNFIDEGTTTMDEYYSSSPSFEVVEEIKVSHGMFVATRQVADTFFHQIVPSQTLKVHLNPVMANNLSIENAETQTQLRWENKGSFFRKLIIKPSKTIASAVVFIFALLFMHCGYLDEEQEKGWYSDNSMRKIMRQSEKIKWNEKEKVWFVGIKSGRGFSVVLKKIGIFLTISLALCTMWANHIIVN 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1782 634 Coils Coil 409 429 - -
Glsi10g1782 634 Gene3D NAC domain 63 128 IPR036093 GO:0003677|GO:0006355
Glsi10g1782 634 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 69 214 - -
Glsi10g1782 634 Gene3D NAC domain 15 62 IPR036093 GO:0003677|GO:0006355
Glsi10g1782 634 Pfam No apical meristem (NAM) protein 7 55 IPR003441 GO:0003677|GO:0006355
Glsi10g1782 634 Pfam No apical meristem (NAM) protein 66 101 IPR003441 GO:0003677|GO:0006355
Glsi10g1782 634 ProSiteProfiles NAC domain profile. 1 124 IPR003441 GO:0003677|GO:0006355
Glsi10g1782 634 SUPERFAMILY NAC domain 4 124 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1782 Glsi-ChrGlsi10 12311422 12316343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1782 1 626 NAC Transcription Factor Family AT1G65910 40.088 1.30e-135 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi10g1782 NAM 2.2e-23 No_clan