Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1781 ATGACAATGGGAGAAGAGTCCTTGGCATCACTCTCCTTTGACAGAGCAGTTGAACAGGCCATTGTATCTATAAAGAAAGGTGCATACTTACTGAAGTGTAGACGTAGAGGAAAGCCAAAGCTCTGCCCTTTCAGACTTTCTCAGGATGATAAAAATTTGATTTGGTATTCTGGACAGCGGGAAAAACATTTGCGACTGAGTGCAGTTACAAAAATTATTCAGGGACAGGGAAATATAAGGTCCCAGAAGCAAAATCAATATGGAAAGGAGTGCCATTCATTTTCTCTAATTTATGCAAATGGTGAACGTTCACTTGATCTGATATGCAAGGACAAAGCACAGGCTACTTCTTGGTTTGTGGGCTTGAGAGCTGTGATATCTAAATCCCAGGATCCAAGGCCTTTTAGTAGTTTAAGAAGCTGCAAAGGAGTGCAGAGTTGTGTCAGTAGTCCAGCTGGAATCTTACGACGGAAGAAAAACCTTGGCCTCTTGGAGGATACTGCTGAATTTACTCAGGTACACAGCGTATGTGCAAGTCCTGCTTTGTCACTTTCAGAAAGGTGCTTCTCTGATGGCTTATCATATACTTGTGATAGCTTGTATTCATCGGAGTCTTTCTTGTCCAATACTCAAAAGGCAATTGATAATTCAGTCCCAAATTCTCCATATATTGATCCAGATATTCGTAATAAGAGTGAATCAACATATGTTGACACAGAGTATCAGAAGAATTTGCCCTATAGGTATCTGCTGCCTACTACCTCCCCGCGTGTAGGAAATAGCAATGTATTGAAAGATGTCATAATCTGGGGAGGAGGGATTGTAGGAATTGTAGGGAATGGGAATGATAGGTTTGTCACCCAACAGGGAAGTCATGTGGTATTGCCAAAGTTACTGGAATCCACCATGATGTTAGATGTACAAAATATAGCTTTAGGAGGAAAACATGCTGCCTTAGTTACAAAACAAGGGGAAGTGTTATGCTGGGGTCAGGGGAAAGGGGGAAGGCTAGGGCACAAAATTGATATTGATGTAAGCTCCCCCAAAATTGTTGATTCTCTTAATGGGATTCATATAAAATATGCTTCCTGCGGTGAGCATCATACATGTGCTTTGACAGATTCTGGTGAAGTATATGCATGGGGGGATGATGGTTGTTGTGCCGATCTGGCTGGTAAAGGGAAATTTAGAAGTCAGTGGATACCATATAAACTTTCTGGTCCTTTAGTTGGTATTAGTATATCAAGTGTTGCTTGTGGGGAATGGCATACTGCAATTGTCTCTTCCTGTGGGCGGCTATTTACATATGGCGATGGTACACTTGGAGTTCTAGGGCATGGGAATGCTCAGAGCATTTCTCAACCCAAAGAAGTTGAATCTCTTAAGGGTCTATGGGTGAGGTCTGTTGCTTGTGGATCATGGCATACAGCGGCTATTGTTGAGATCATGGTTGACCGTTTTAGGTACAATACTACTAGTGGTAAGCTGTTTACTTGGGGTGATGGAGATGACGGGATGCTTGGACATGCTGATAATGGAAGGAAGCTTTTGCCAACTAGTGTTGCACAACTCTTGGATTATGATTTTGTTCAAGTATCTTGTGGAAGAAAGTTGACTGTTGCACTGACTAATATGGGTAAAGTTTTCACAATGGGAAGTGCAGTGCATGGACAGCTAGGAAATCCACATGCCAAGGATAAATCAGTGACAATTGTTGAAGGACAGCTTAAACAGGAGTTTGTGAAAGAGATATCATCAGGTTCATATCATGTTGCTGTCTTGACATCTGCAGGGAGTGTCTATACATGGGGCAAGGGAGCAAATGGACAGCTAGGATTAGGTGACACTGAAGACAGATACTCACCATCTTTTGTGGAGGCTCTAAGAGACAGGCAGATCGAAAGTATCACTTGCGGGCCAAGCATCACGGCTGCAGTCTGTTTACACAAACCTATTTCTATTAGTGACCAGTCAGCTTGTAGTGGTTGTAAGTTGCCTTTTGGATTTACAAGGAAGAAGCATAACTGCTATAATTGTGGTCTCCTATTTTGCCATTCATGTAGTAGTAAAAAAGTTACAAATGCATCTCTAGCACCGAATAAGAGCAAGGCTTTTCGGGTTTGTGATCAATGCTTCAATAAACAGCTAGGAAATGCACATTCAGTTATGGCACCAAAGTCTAGAAACTATAACACTCAGCAGCTGCTAAAGCATCAGAATAAGTTTCCAGATCTTACAGAAGATAGAGGAGAAACAACTGTGACACAGGGTCCGCTGTTGTCTCTCAGTCAATCATGTTACCGGAAAAGCATACCCGGTGGAAGGAGAGACTGGAAAAGCCAACAAGAAAATCAGCAGTATTTAGAAGAAAGTTCTTCTGTGTTTGGTGGAGTACCACAATGGGGGCAAGTTCCATGCCCTGCCCGATTTAAATTAAATTGTACAGAAAATTCTGTTTCATCTTCCAAAAAAAAATTAGCTTCTCTTACTCCAATGAATTTAGAACCTACCATATCCAACATCCCTGATGCAAAGAAAGATATGACAAAGTCTAATAAGATACTCATAGAAGAAGTTCAGAGGCTGGAAGCTGAGACTAGAAGCCTTGAAGAGCTATGTGAGATCAGAAACCAAAAGATACAAGAATGTCATCAAAAAATTGAGGAGAGTTGGCTCTTGGCAAGGGAGGAAGCTGCAAAGAGTAAGGCAGCAAAAGAGGTCATAAAAGCTTTGGTATTAAGGCTACATACGATGTCTGGAAAAGCCAATGCTGGACAAGAAGGAAAGTTTGGGGTACAGGAATGTCTGTCGAATTTAACACCCATCCATACTCCAAAGGATGGCAATGTGGACAGTCTATCTAATTCCCCTATAGTATTCTCTGACACATTGAAATCCAGATTTACGAGAAGCATGGTCCTCAAAAGTGATAGATCAAAGGATGATTCTCAGTTAACTAGAGCAGAATTTCAACAAGACAGCACTGAATGTTTGAAGGTTGATCAATGGGTAGAACAGTATGAGCCTGGTGTTTACATCACATTTACAACCTTGCCATGTGGGCAAAAGAGCCTTAAGCGAGTGAGATTTAGCCGGAGGCAATTTTCTGAGAAGGAAGCAGAGAGATGGTGGGAGGAGAATCAAGCGAAAGTCTACAAAAAGTATGGGATTGAAGGATGTATTAACACAAGCCAAAGCTGGGAGAAGGGCTAA 3213 0.4171 MTMGEESLASLSFDRAVEQAIVSIKKGAYLLKCRRRGKPKLCPFRLSQDDKNLIWYSGQREKHLRLSAVTKIIQGQGNIRSQKQNQYGKECHSFSLIYANGERSLDLICKDKAQATSWFVGLRAVISKSQDPRPFSSLRSCKGVQSCVSSPAGILRRKKNLGLLEDTAEFTQVHSVCASPALSLSERCFSDGLSYTCDSLYSSESFLSNTQKAIDNSVPNSPYIDPDIRNKSESTYVDTEYQKNLPYRYLLPTTSPRVGNSNVLKDVIIWGGGIVGIVGNGNDRFVTQQGSHVVLPKLLESTMMLDVQNIALGGKHAALVTKQGEVLCWGQGKGGRLGHKIDIDVSSPKIVDSLNGIHIKYASCGEHHTCALTDSGEVYAWGDDGCCADLAGKGKFRSQWIPYKLSGPLVGISISSVACGEWHTAIVSSCGRLFTYGDGTLGVLGHGNAQSISQPKEVESLKGLWVRSVACGSWHTAAIVEIMVDRFRYNTTSGKLFTWGDGDDGMLGHADNGRKLLPTSVAQLLDYDFVQVSCGRKLTVALTNMGKVFTMGSAVHGQLGNPHAKDKSVTIVEGQLKQEFVKEISSGSYHVAVLTSAGSVYTWGKGANGQLGLGDTEDRYSPSFVEALRDRQIESITCGPSITAAVCLHKPISISDQSACSGCKLPFGFTRKKHNCYNCGLLFCHSCSSKKVTNASLAPNKSKAFRVCDQCFNKQLGNAHSVMAPKSRNYNTQQLLKHQNKFPDLTEDRGETTVTQGPLLSLSQSCYRKSIPGGRRDWKSQQENQQYLEESSSVFGGVPQWGQVPCPARFKLNCTENSVSSSKKKLASLTPMNLEPTISNIPDAKKDMTKSNKILIEEVQRLEAETRSLEELCEIRNQKIQECHQKIEESWLLAREEAAKSKAAKEVIKALVLRLHTMSGKANAGQEGKFGVQECLSNLTPIHTPKDGNVDSLSNSPIVFSDTLKSRFTRSMVLKSDRSKDDSQLTRAEFQQDSTECLKVDQWVEQYEPGVYITFTTLPCGQKSLKRVRFSRRQFSEKEAERWWEENQAKVYKKYGIEGCINTSQSWEKG 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1781 1070 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 376 430 IPR000408 -
Glsi10g1781 1070 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 265 323 IPR000408 -
Glsi10g1781 1070 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 431 482 IPR000408 -
Glsi10g1781 1070 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 661 716 IPR013083 -
Glsi10g1781 1070 SMART fyve_4 648 717 IPR000306 GO:0046872
Glsi10g1781 1070 SUPERFAMILY RCC1/BLIP-II 266 650 IPR009091 -
Glsi10g1781 1070 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 654 716 IPR017455 -
Glsi10g1781 1070 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 61 916 - -
Glsi10g1781 1070 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 469 479 IPR000408 -
Glsi10g1781 1070 Pfam Transcription factor regulating root and shoot growth via Pin3 1002 1055 IPR013591 -
Glsi10g1781 1070 Pfam Regulator of chromosome condensation (RCC1) repeat 431 479 IPR000408 -
Glsi10g1781 1070 Pfam Regulator of chromosome condensation (RCC1) repeat 324 372 IPR000408 -
Glsi10g1781 1070 Pfam Regulator of chromosome condensation (RCC1) repeat 493 542 IPR000408 -
Glsi10g1781 1070 Pfam Regulator of chromosome condensation (RCC1) repeat 375 426 IPR000408 -
Glsi10g1781 1070 Pfam Regulator of chromosome condensation (RCC1) repeat 598 646 IPR000408 -
Glsi10g1781 1070 CDD FYVE_like_SF 659 712 - -
Glsi10g1781 1070 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 324 375 IPR000408 -
Glsi10g1781 1070 CDD PH_PLC_plant-like 15 127 - -
Glsi10g1781 1070 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 546 597 IPR000408 -
Glsi10g1781 1070 Gene3D - 16 132 IPR011993 -
Glsi10g1781 1070 Pfam FYVE zinc finger 656 714 IPR000306 GO:0046872
Glsi10g1781 1070 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 598 649 IPR000408 -
Glsi10g1781 1070 Gene3D - 258 388 IPR009091 -
Glsi10g1781 1070 Gene3D - 389 482 IPR009091 -
Glsi10g1781 1070 Gene3D - 487 660 IPR009091 -
Glsi10g1781 1070 SUPERFAMILY PH domain-like 16 126 - -
Glsi10g1781 1070 PRINTS Chromosome condensation regulator RCC1 signature 266 282 IPR000408 -
Glsi10g1781 1070 PRINTS Chromosome condensation regulator RCC1 signature 535 553 IPR000408 -
Glsi10g1781 1070 PRINTS Chromosome condensation regulator RCC1 signature 417 433 IPR000408 -
Glsi10g1781 1070 PRINTS Chromosome condensation regulator RCC1 signature 433 447 IPR000408 -
Glsi10g1781 1070 PRINTS Chromosome condensation regulator RCC1 signature 593 614 IPR000408 -
Glsi10g1781 1070 PRINTS Chromosome condensation regulator RCC1 signature 376 392 IPR000408 -
Glsi10g1781 1070 Coils Coil 845 879 - -
Glsi10g1781 1070 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 494 545 IPR000408 -
Glsi10g1781 1070 SUPERFAMILY FYVE/PHD zinc finger 655 725 IPR011011 -
Glsi10g1781 1070 ProSiteProfiles BRX domain profile. 1001 1056 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1781 Glsi-ChrGlsi10 12297791 12307197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1781 1002 1058 Major Intrinsic Protein MIP AT1G31880 49.123 5.61e-13 70.1