Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1778 ATGACATGGTATCACAAAGAAAAGGGAGCTGAAAATTTTGACATTTCTGCAGCAACTGCAATTTCTCATTATTGTTCTGTTTTTATCCCATTCCAGCTGTTCAATCCACAAACCTGCCTTTCTCTATATATAACTTCACTTTGGCTCGATCTTTTCCTTTCGTCTTTCGTCCCTTCCCTCTCTTCCTTCGTCTCGCAAGGGAAGCCCATGGAAATGCCACTTGCTCTGTTCGTCACACTAACAATTTTACTCACTCTCTCTTCTACGGCCACCTCCCATTACTCCTTCTCCTCTTCTTCTTCTTCCCCACCTTCTTCTTCTCTTCAATCTTCATCTTCCTCCTCGCTCTCCGAATGGCGATCTGCACGCGCCACTTACTACGCCGCCGCAGATCCCAGGGACGCGGTTGGCGGCGCCTGCGGATATGGTGACCTCGTCAAAGCAGGTTATGGCATGGCGACTGTGGGTCTCAGTGAGTCACTCTTCGAGCGTGGCCAGATCTGTGGTGCTTGCTTTGAGCTCCGCTGCGTCGACGACCTCCGCTGGTGTATCCCCGGAACCTCCATTATCGTCACCGCTACGAACTTCTGTGCGCCGAACTATGGTTTCCCCGCCGAGGGAGGTGGCCACTGTAACCCTCCCAATAAGCATTTCGTGCTCCCTATTGAAGCATTTGAGAAGATCGCTATTTGGAAAGCTGGGAACATGCCGGTCCAGTATCGGAGGATAAAGTGCAGAAAGGAAGGAGGAATTCGATTTACAGTCACCGGTTCTGGTATCTATATTTCAGTGCTGATCAGCAATGTAGCTGGTACCGGAGACATTGTTGCCGTGAAGATTAAGGGCTCAAGAACTGGTTGGCTTCCAATGGGTCGGAATTGGGGTCAAAACTGGCATGTAAATGCATTACTACAGAATCAACCTCTTTCATTTGAGGTCACTGGTAACGATGGGCTAACAGTTACATCTTACAATGTTGCTCCCAAGGATTGGAGCTTTGGACAAACCTTCGAAGGCAAGCAGTTTGAGTCGTAA 1035 0.4899 MTWYHKEKGAENFDISAATAISHYCSVFIPFQLFNPQTCLSLYITSLWLDLFLSSFVPSLSSFVSQGKPMEMPLALFVTLTILLTLSSTATSHYSFSSSSSSPPSSSLQSSSSSSLSEWRSARATYYAAADPRDAVGGACGYGDLVKAGYGMATVGLSESLFERGQICGACFELRCVDDLRWCIPGTSIIVTATNFCAPNYGFPAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRIKCRKEGGIRFTVTGSGIYISVLISNVAGTGDIVAVKIKGSRTGWLPMGRNWGQNWHVNALLQNQPLSFEVTGNDGLTVTSYNVAPKDWSFGQTFEGKQFES 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1778 344 PANTHER EXPANSIN-A15 88 342 IPR002963 GO:0009664
Glsi10g1778 344 Pfam Expansin C-terminal domain 251 328 IPR007117 -
Glsi10g1778 344 PRINTS Expansin signature 189 199 IPR002963 GO:0009664
Glsi10g1778 344 PRINTS Expansin signature 296 317 IPR002963 GO:0009664
Glsi10g1778 344 PRINTS Expansin signature 325 341 IPR002963 GO:0009664
Glsi10g1778 344 PRINTS Expansin signature 208 225 IPR002963 GO:0009664
Glsi10g1778 344 PRINTS Expansin signature 225 238 IPR002963 GO:0009664
Glsi10g1778 344 PRINTS Expansin signature 149 163 IPR002963 GO:0009664
Glsi10g1778 344 PRINTS Expansin signature 261 282 IPR002963 GO:0009664
Glsi10g1778 344 PRINTS Expansin signature 249 261 IPR002963 GO:0009664
Glsi10g1778 344 PRINTS Expansin signature 176 187 IPR002963 GO:0009664
Glsi10g1778 344 Gene3D - 250 342 IPR036749 -
Glsi10g1778 344 SUPERFAMILY PHL pollen allergen 247 339 IPR036749 -
Glsi10g1778 344 PRINTS Expansin/Lol pI family signature 118 133 IPR007118 GO:0005576
Glsi10g1778 344 PRINTS Expansin/Lol pI family signature 158 176 IPR007118 GO:0005576
Glsi10g1778 344 PRINTS Expansin/Lol pI family signature 325 339 IPR007118 GO:0005576
Glsi10g1778 344 PRINTS Expansin/Lol pI family signature 136 154 IPR007118 GO:0005576
Glsi10g1778 344 PRINTS Expansin/Lol pI family signature 233 249 IPR007118 GO:0005576
Glsi10g1778 344 PRINTS Expansin/Lol pI family signature 287 301 IPR007118 GO:0005576
Glsi10g1778 344 SUPERFAMILY Barwin-like endoglucanases 112 268 IPR036908 -
Glsi10g1778 344 Gene3D - 103 246 IPR036908 -
Glsi10g1778 344 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 260 339 IPR007117 -
Glsi10g1778 344 Pfam Lytic transglycolase 155 240 IPR009009 -
Glsi10g1778 344 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 137 250 IPR007112 -
Glsi10g1778 344 SMART dpbb_1 154 240 IPR007112 -
Glsi10g1778 344 CDD DPBB_EXPA_N 118 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1778 Glsi-ChrGlsi10 12258350 12264144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1778 118 344 Expansin Gene Family AT3G03220 86.344 6.42e-152 426