Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1777 ATGGCCATTCAAGATCAAAACGGAGTTACTAGATCGGACGGTGGTCTTCAAGTAGGAAATGGAGTATCTTTGAGTTCTGGGCTACATTCTGTTACACGTATTCAACTAAATGATCAGTTTTCTTGTGGGAATGACTATGCTCCTAAGGTAAGGAAGCCATATACTATCACGAAACAAAGAGAGAGATGGACAGATGAAGAGCATAAGAAGTTCCTTGAGGCTTTAAAGCTGTATGGCCGGGCTTGGCGACGAATTGAAGAACATGTTGGCACAAAGACTGCAGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTTCGTGATTCTAGCGTGAACAGTACGAGCTCGATGGAGTCCATTGAGATTCCACCTCCACGGCCAAAACGAAGGCCAATGCATCCTTACCCTCGTAAGGTGGTAGAGCTTCCTAATAAAGAAATTTACAACCCAGAACAGGCAATGAGGTCTAATTCTCTGAAATCATCAGATTTTGATCAAGAAAACCAATCTCCCAAGTCAGTATTATCTGTAGTTGGTTCAGACACCCTCGGTTCTTCTGATTCAGATACACCAAATGGAAGCTCATCCCCAATCTCATCCATTAGTGGTGTTCATACCAGCAGCTTTGTTCTTGCTGAACCTAAAATACAACCATCTGAGGAAGATGGATCAACACCAGCTGGACTAAATGCTGATTCAATTCTTGATGAGAAACTTCCTATGAAATACGAGGTTTTCCCAAAAGAAAGTGTTTGTACCATAGAAGATGCAGCAGAAGAATCATCTGGTCGGACTGTTAAGCTTTTTGGGACGACTTTGTTGGTAACAGATACCTGCAGGCAGTCCTCTCCAACAACGGAAGCATGCAAATTAATACCTTCAGACGCGAGTGAGGGGAGAGCTTTGCAGACACTCCACTCGAACTTTTTGCCAACCGAACCTTTCTTGAAAGTGGAATGTGGTCAGAGTAATATGCCTAAAGAAGCACAAGCTGCTGTGTATATCATGCAAATTCAGAGTAGAACTTCAGAAGATGCAGAAGGTCCTTCTACTTTTGTTCCTTGGTGGAGTCTTCCCCACATTAGACCATTCATGCCACTGCACAAGGAGAAGCCTGAGGGAAAACATCTAGACTCAAATCTTGGGGTAGTTGAACATAAACAAGTTCAAAAGGAAGGATCTTGGACTGGTTCAAACACCAGTTCTTCTGTAAATAATGGGGAGAAGGAGAATGATGAAAAACCAGGTATTCAAGCCAAAAATCATTTTCCAAAAAACTGGGGGAAGGGGTTCGTGCCATATAAAAGGTGCATAGCAGAGAGAGAAAACCAGTCCTCACCGTTAACAAAGGAGGATAGGGAAGAGCAACGAATCCGTCTTTCCTTATAA 1398 0.427 MAIQDQNGVTRSDGGLQVGNGVSLSSGLHSVTRIQLNDQFSCGNDYAPKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDSSVNSTSSMESIEIPPPRPKRRPMHPYPRKVVELPNKEIYNPEQAMRSNSLKSSDFDQENQSPKSVLSVVGSDTLGSSDSDTPNGSSSPISSISGVHTSSFVLAEPKIQPSEEDGSTPAGLNADSILDEKLPMKYEVFPKESVCTIEDAAEESSGRTVKLFGTTLLVTDTCRQSSPTTEACKLIPSDASEGRALQTLHSNFLPTEPFLKVECGQSNMPKEAQAAVYIMQIQSRTSEDAEGPSTFVPWWSLPHIRPFMPLHKEKPEGKHLDSNLGVVEHKQVQKEGSWTGSNTSSSVNNGEKENDEKPGIQAKNHFPKNWGKGFVPYKRCIAERENQSSPLTKEDREEQRIRLSL 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1777 465 FunFam protein REVEILLE 6 isoform X1 62 110 - -
Glsi10g1777 465 MobiDBLite consensus disorder prediction 448 465 - -
Glsi10g1777 465 MobiDBLite consensus disorder prediction 394 409 - -
Glsi10g1777 465 SMART sant 59 107 IPR001005 -
Glsi10g1777 465 MobiDBLite consensus disorder prediction 441 465 - -
Glsi10g1777 465 MobiDBLite consensus disorder prediction 153 204 - -
Glsi10g1777 465 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Glsi10g1777 465 MobiDBLite consensus disorder prediction 126 143 - -
Glsi10g1777 465 Gene3D - 62 108 - -
Glsi10g1777 465 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Glsi10g1777 465 MobiDBLite consensus disorder prediction 391 428 - -
Glsi10g1777 465 PANTHER SWI/SNF COMPLEX-RELATED 43 409 - -
Glsi10g1777 465 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Glsi10g1777 465 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Glsi10g1777 465 CDD SANT 62 105 IPR001005 -
Glsi10g1777 465 NCBIfam myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Glsi10g1777 465 SUPERFAMILY Homeodomain-like 54 107 IPR009057 -
Glsi10g1777 465 MobiDBLite consensus disorder prediction 116 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1777 Glsi-ChrGlsi10 12255823 12258298 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi10g1777 Myb_DNA-binding 1.1e-13 CL0123