Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1757 ATGAGAGCAAACTTTGATCTTGAAGTGGAGGCCTCTGCAGAGAATGAATCTGAAATTAGCAGCCAGGTTGCCTCCAATATATCCATTCAAGAAGTCTCTGCAGGTCCCTGTAGTGACAGCCTCACAAACACTTCCGACCACACAGCTGCTTTAGGATTTCATCCAAATATAGATCCCATTTCACTTGACTTAACTCTCAGCTTTAATAACAATGAGCTAGGGGCGAGAGATTCCGTAGGGCTCTCATTCTCAAGCACCAGTGAGAGCAGCAATGAAATTGCCTCTCAAACTACAGCGGCCAACAATATCCCGCGGGTTTTCTCTTGCAACTACTGCCAGCGCAAGTTTTTCAGCTCGCAGGCTCTTGGGGGCCACCAGAATGCACACAAGAGAGAAAGAACACTAGCAAAGAGGGCTATGAGAATGGGGTTTTTCTCTGAGAGGTATGCCAGTCTAGCATCTCTCCCTCTGCATGGTTCTTTCAGGTCTTTAGGGATAAAAGCACACTCTTCGCTGCACCATAGTTTTTCACCATCAACGAGGCCTTCTGAGATGAAAAGCAATGCAAGATTTGAGCAAGGATATGTGGGTCTACCAATATTCTTGGAGGATGATGAGGCAGAACTACTATGGCCCGGTAGTTTCCGTCAGGTTGCAGATGTAGGTGATGCTCATCATCAGAATTTCGTGATGACTGGGAGTTCAGATTTGAGTTTTTCACAGGTGAATCCACCAGTAGTAGACCTAGAGGACCCAACTCCAGATCTAACATTGAAACTTTGA 783 0.4598 MRANFDLEVEASAENESEISSQVASNISIQEVSAGPCSDSLTNTSDHTAALGFHPNIDPISLDLTLSFNNNELGARDSVGLSFSSTSESSNEIASQTTAANNIPRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGFFSERYASLASLPLHGSFRSLGIKAHSSLHHSFSPSTRPSEMKSNARFEQGYVGLPIFLEDDEAELLWPGSFRQVADVGDAHHQNFVMTGSSDLSFSQVNPPVVDLEDPTPDLTLKL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1757 260 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 50 188 IPR044246 GO:0009788
Glsi10g1757 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 134 IPR013087 -
Glsi10g1757 260 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
Glsi10g1757 260 FunFam Zinc finger protein 2 83 153 - -
Glsi10g1757 260 Gene3D Classic Zinc Finger 82 152 - -
Glsi10g1757 260 SUPERFAMILY beta-beta-alpha zinc fingers 105 134 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1757 Glsi-ChrGlsi10 12112517 12113299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1757 88 260 C2H2 Transcription Factor Family AT1G66140 50.761 1.39e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi10g1757 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1757 10 12112517 12113299 Glsi10g1757 10 12112517 12113299 CCT
Glsi10g1757 10 12112517 12113299 Glsi10g1757 10 12112517 12113299 ECH