Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1756 ATGCGGGGCCCGCCTCCATGTGCCTCACTGCCTTCTTTATTTCTCATTACTCTCTCTCTTCTGTGCAGCTGTAGCCATTACCGCCATCCGCTCCTCTTTCCCTCGCCGTCTTTTTCAGCCCGTTTCTCTGTTCACGCTGGAGTTAAGATGAGGAAGAAAACCCTCGTAAAGTTCCAGCCTTTGCCCATTTTTCTTGCTGGGTTCTTGTCCATCTTCCTCTGCGTCGAGTCTCAAGCAACCCCAAGCCAAGATGCTCCTGTAATGCTAGCTCTCAAGAAGAGCCTCAACCCCCGCGAGTCTCTCGGATGGTCTGACCCAGACCCCTGCAAATGGAATCACGTCGGTTGTTCCGATGACAAACGAATCACACGGATCCAAGTCGGACGTCAAGGCCTCCAAGGTACGCTCCCACCGAGTCTACGAAATCTCACTGAGTTACAGCGTTTGGAGCTCCAATATAATAACATTTCGGGTCCTCTTCCTAGCTTAAGTGGGTTGAGTTCATTACAAGTTCTTCTGCTTAGTAACAACCAATTTAGCTCGATTCCTAGCGACTTTTTCTTTGGTATGTCTCAGCTTCAATCCGTGGAGATCGATAATAACCCATTTGAGGATTGGGAAATACCTGAAAGTCTCCGAAACGCTTCGACACTTCAGAACTTCTCGGCGAACTCGGCTAATATCAAAGGCAAGATACCAGAGTTTTTTAATTCAGTGGTGTTTCCTGGTCTTACCCTTTTGCATTTGTCTTTCAATAACCTCGAGGGTGGGTTGCCCGCGAACTTTTCTGGGTTGCAAATTGAGACTTTGTGGCTCAATGGGCAAAAGAGTGAAGGTAAGCTTAGTGGACCCATAGATGTTATACAGAATATGACTTTATTGACGGAGGTTTGGTTGCATACAAATGCGTTTTCGGGTCCATTACCAGATTTTTCAGGATTGAAGGATTTGCGGACCTTGAGTTTGAGGGATAATTCGTTTACTGGTCCTGTTCCAAAGTCATTGATGAATCTTAAATCACTAAAAGTTCTGAATTTGACAAACAACCTGCTTCAAGGTCCTATGCCAGTGTTCAATCCTGGGGTTGATGTTGATATGAATAAGGATTCAAATAGCTTTTGCTTGCCTAGTCCTGGGGATTGTGATCCTCGTGTGAATATTCTGCTTTCCATTGTTAAACTTATGGGCTATCCTCCAAGGTTTGCTGAGAGTTGGAAGGGGAATGATCCATGCGCTGATTGGCTTGGGATTACCTGTAGTGATGGGAACATTTCTGTTGTTAATTTTCAGAAAATGGGTCTAACGGGTATGATATCCCCAGAGTTTGCCTCACTCAAATCACTGCAAAGACTCATTCTTGCTGATAACAATCTCACTGGTTTGATTCCAGGAGAGTTCACAACTCTTCCTATGCTTACTGAACTGAACGTCGCAAACAATCAGCTTTATGGAAAAATCCCATCTTTTAAGAGTAATGTAATTATTAACACAAATGGTAACAAGGATATAGGGAAGGATAAAAGCAGTTCATCCCCTCAAGGTCCACTGTCTCCAAACCCAACAGGTCCAACTTCGAGAGACAAAAATGGTGGGAGTTCTGAAAATAGTGGCAAAAAATCATCCCATGTAGCAGTAATTGTAATTGTGGCAATTGGCGGTGTATTTTTGGTTTCGGTGGTTGGTTTCTTAGTTTTCTGCTTGTGTAGAATGAAGCAAAAGCGGTTAAGCAGGGTGCAAAGCCCAAATGCACTAGTAATTCACCCTCGTCATTCCGGTTCTGATAATGAAAGTTTGAAGATAACAGTTGCTGGTTCAAGTGTCAGTGTTGGTATGGCTAGTGAAACCCAAACTGTGCCTAGCAATGAGACAGGAGACATCCAAATGGGTGAATCCGGAAACATGGTCATTTCTATACAAGTCTTGAGGAATGTTACTGACAATTTCAGCGAAAATAATATATTGGGACAAGGAGGTTTTGGAACGGTTTATAAAGGTGAACTTCATGATGGGACAAAAATTGCAGTGAAGAGAATGGAGTCTGGGGCAATAACTGGAAAGGGTACAACAGAATTTAGGTCTGAAATTGCTGTTCTGACAAAGGTTCGGCACCGGCATCTTGTTGCTCTACTTGGTTACTGCTTGGATGGGAATGAGAAGCTTTTGGTGTACGAGTACATGCCTCAGGGTACACTGAGTAGGCATCTCTTTAACTGGCCAGAAGAAGGATTGCAGCCCCTGGAGTGGAATAGAAGGTTGATCATTGCCTTAGATGTGGCTAGGGGTGTTGAGTACCTTCATGGCTTGGCCCATCAAAGCTTTATACATAGGGACTTAAAGCCTTCAAACATTCTTCTTGGAGATGATATGAGGGCAAAGGTTGCAGATTTTGGTCTTGTGCGTCTTGCTCCGGAAGGAAAAGCCTCAATAGAAACACGAATTGCGGGAACTTTTGGATACTTGGCACCAGAATATGCAGTTACTGGGCGTGTGACAACGAAAGTTGATGTATACAGTTTTGGGGTAATATTGATGGAAATTATAACAGGAAGGAAAGCACTGGACGAGACTCAGCCCGAGGACAGTATGCACCTCGTAACATGGTTCCGGAGAATGTACATAAACAAAGACTCATTCAGCAAGGCCATTGATCCCACAGTTGATCTCAACGAGGAAACACTTGCTAGTATTCACACAGTGGCAGAGTTAGCCGGGCACTGCTGCGCGAGAGAACCATATCAAAGACCTGACATGGGCCATGCTGTGAATGTTCTTTCTTCTCTCATAGAACTCTGGAAACCCTCTGATCAGAACTCTGAAGATATCTATGGCATTGACCTCGACATGTCTTTACCACAGGCGCTTAAGAAATGGCAAGCTTATGAAGGTAGAGGCCAAATGGAGTCTTCTTCTTCTTCACTCCTTCCCAGCTTGGACAACACACAGACAAGCATACCTACCCGCCCATATGGTTTTGCAGACTCTTTCACATCAGCAGATGGGAGGTGA 3006 0.4448 MRGPPPCASLPSLFLITLSLLCSCSHYRHPLLFPSPSFSARFSVHAGVKMRKKTLVKFQPLPIFLAGFLSIFLCVESQATPSQDAPVMLALKKSLNPRESLGWSDPDPCKWNHVGCSDDKRITRIQVGRQGLQGTLPPSLRNLTELQRLELQYNNISGPLPSLSGLSSLQVLLLSNNQFSSIPSDFFFGMSQLQSVEIDNNPFEDWEIPESLRNASTLQNFSANSANIKGKIPEFFNSVVFPGLTLLHLSFNNLEGGLPANFSGLQIETLWLNGQKSEGKLSGPIDVIQNMTLLTEVWLHTNAFSGPLPDFSGLKDLRTLSLRDNSFTGPVPKSLMNLKSLKVLNLTNNLLQGPMPVFNPGVDVDMNKDSNSFCLPSPGDCDPRVNILLSIVKLMGYPPRFAESWKGNDPCADWLGITCSDGNISVVNFQKMGLTGMISPEFASLKSLQRLILADNNLTGLIPGEFTTLPMLTELNVANNQLYGKIPSFKSNVIINTNGNKDIGKDKSSSSPQGPLSPNPTGPTSRDKNGGSSENSGKKSSHVAVIVIVAIGGVFLVSVVGFLVFCLCRMKQKRLSRVQSPNALVIHPRHSGSDNESLKITVAGSSVSVGMASETQTVPSNETGDIQMGESGNMVISIQVLRNVTDNFSENNILGQGGFGTVYKGELHDGTKIAVKRMESGAITGKGTTEFRSEIAVLTKVRHRHLVALLGYCLDGNEKLLVYEYMPQGTLSRHLFNWPEEGLQPLEWNRRLIIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASIETRIAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMEIITGRKALDETQPEDSMHLVTWFRRMYINKDSFSKAIDPTVDLNEETLASIHTVAELAGHCCAREPYQRPDMGHAVNVLSSLIELWKPSDQNSEDIYGIDLDMSLPQALKKWQAYEGRGQMESSSSSLLPSLDNTQTSIPTRPYGFADSFTSADGR 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1756 1001 ProSitePatterns Serine/Threonine protein kinases active-site signature. 773 785 IPR008271 GO:0004672|GO:0006468
Glsi10g1756 1001 Gene3D Ribonuclease Inhibitor 383 507 IPR032675 -
Glsi10g1756 1001 ProSitePatterns Protein kinases ATP-binding region signature. 654 676 IPR017441 GO:0005524
Glsi10g1756 1001 ProSiteProfiles Leucine-rich repeat profile. 168 189 IPR001611 GO:0005515
Glsi10g1756 1001 FunFam receptor protein kinase TMK1 610 725 - -
Glsi10g1756 1001 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Glsi10g1756 1001 ProSiteProfiles Protein kinase domain profile. 648 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1756 1001 SMART LRR_typ_2 143 165 IPR003591 -
Glsi10g1756 1001 SMART LRR_typ_2 445 468 IPR003591 -
Glsi10g1756 1001 SMART LRR_typ_2 241 264 IPR003591 -
Glsi10g1756 1001 SMART LRR_typ_2 338 360 IPR003591 -
Glsi10g1756 1001 SMART LRR_typ_2 166 189 IPR003591 -
Glsi10g1756 1001 SMART LRR_typ_2 469 491 IPR003591 -
Glsi10g1756 1001 SUPERFAMILY L domain-like 108 491 - -
Glsi10g1756 1001 SUPERFAMILY Protein kinase-like (PK-like) 623 932 IPR011009 -
Glsi10g1756 1001 Gene3D Ribonuclease Inhibitor 81 381 IPR032675 -
Glsi10g1756 1001 FunFam receptor protein kinase TMK1 726 943 - -
Glsi10g1756 1001 MobiDBLite consensus disorder prediction 967 990 - -
Glsi10g1756 1001 Gene3D Phosphorylase Kinase; domain 1 608 725 - -
Glsi10g1756 1001 PANTHER OSJNBA0070M12.3 PROTEIN 68 1001 - -
Glsi10g1756 1001 Gene3D Transferase(Phosphotransferase) domain 1 726 946 - -
Glsi10g1756 1001 Pfam Protein kinase domain 649 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1756 1001 Pfam Leucine rich repeat N-terminal domain 82 117 IPR013210 -
Glsi10g1756 1001 Pfam Leucine rich repeat N-terminal domain 386 420 IPR013210 -
Glsi10g1756 1001 MobiDBLite consensus disorder prediction 967 1001 - -
Glsi10g1756 1001 CDD STKc_IRAK 654 927 - -
Glsi10g1756 1001 Pfam Leucine rich repeat 442 482 IPR001611 GO:0005515
Glsi10g1756 1001 MobiDBLite consensus disorder prediction 500 538 - -
Glsi10g1756 1001 FunFam Leucine-rich repeat receptor-like kinase 383 506 - -
Glsi10g1756 1001 FunFam Receptor-like kinase TMK4 82 379 - -
Glsi10g1756 1001 SMART serkin_6 648 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1756 Glsi-ChrGlsi10 12097102 12100589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1756 134 930 Receptor kinase-like Gene Family AT5G07280 32.888 2.78e-87 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Glsi10g1756 Pkinase 2.5e-46 CL0016